| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2505 |
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| Symbol | |
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| ID | 4019008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2989291 |
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| End bp | 2993088 |
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| Gene Length | 3798 bp |
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| Protein Length | 1265 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956536 |
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| Product | SMC protein-like protein |
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| Protein accession | YP_563508 |
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| Protein GI | 91793857 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0217131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATCC TTAGCCTGCG CTTTAAAAAC ATTAACTCCC TTAAAGATGA GTGGAAAATT
GATTTTACCC TGTCGCCATT CAAAGAAAAT GGCTTGTTTG CCATCACGGG CCCCACGGGC
AGCGGTAAAA CCACCATTTT AGATGCCATC TGTTTAGCCT TGTATCACAG AACGCCAAGA
CTGAGTGTGA TTTCTAAATC CACCAATGAG CTGATGACCC GTGGTACAGG TAGCGCCTTA
GCCGAAGTGG AGTTTGAAGT AAAAGGCAAG GCTTATCGCG CCTTTTGGAG TCAGCGCCGT
TCTCGAGATC TTGCCGATGG CAACCTGCAA GATGCACAGG TTGAGCTTGC TGAACTCGAG
TCTGGGGTGA TTCTTGCCAG TCAAATCAAA CAAAAAACAG AGTTGGTCGA GTCTATTACC
GGGCTTGATT TTGCGCGATT CACCCGCTCT ATGCTGTTAT CTCAAGGGGA TTTTGCTGCC
TTTTTAAATG CCAGTGCCAA CGAGCGAGCC GAGCTACTCG AAGAATTGAC CGGCACTGAG
ATCTACAGCT TAATCTCGGA GCGGGTGCAT CTTGAGTTTG GCGAACAAAA ACATCGTCTT
AACCTGCTAA AAGTGCAATT GGATAGCGTT AAGTTGTTAA GTGCAGAAGA GCGTGAAGCA
AAGCTTGCTA GCGCTTTGGC GTTAAAAGAG ACTCTGGCAC AGAAACAGCA GCAGTTACTA
GCCTTAGTTG ATTGCCTTAC ATGGTGTGAT GCCATGCAGG CACAAACGCA GCTGGTAGAG
CAAAGCGAGC AGGGGCTTCA GGCTGCAGAA GAGGCCATTA GGGATGAAAA AAATCAGTTA
CAACGCCTAG CAGACAGTGA ACCTGCGCAG GGATTAGCGC CATTGTTTGA GAGAAAACAG
CAACTCAGCC AGCAGCATCA AGCCCTTGAT AAACAGGTCG CGGAGCTTGG GCAGCAATTA
GTGAGCGCAC AGCAAACCCT AAAAGAGCTG AGTGAGCAGC AAAGCGCGGC GGCTACAGCA
CTTATTGTTG AAAAACAGGC GCAGCAAGCC CTCCATCATT TAATAGACAC CCAGGTTCAG
CCCTTAGAGC AAAAGCTGGC CCAGAGCCGA TTTAAATTAA CTCAGTGCCA ACAAGCCCTT
GATAAATCTC GCACCACTGA GGATGAATTA AATCATGAGC TATCGGCGGT TCAAGCTCGC
AAGCAGGATT TAACCCTTGA AATTAAAGAG CTTTCAACAT TGCTTAGTCA ATATCCCCAA
GGGCAAGCCC TCGGTGAGCA GTTAAGCGGT TGGAAGACGC AAGTCGCGCA GTTAATTGAA
CTTGAACAGC AGCGCGGTGA GCTTGATATT CAGCAAAGGC AGTTGCAGCA ATCCTCTACG
CTGTGCAAAC AAAACCTTGA GACTAACCAG CAGCAATTAA CGCAAGCCCA GCAGGTACAA
ATTAATGCCA GTCATTTGCT GGCAGCAACG ACAGCGCAGA TAAATGAATT GCTCAGTGGC
CGTGAGATAC ATCAGCTGCA ACAAGAGTAT CAGCAGTGTC TCGATAGCCA GCATGGGCGC
AGTGAGCTGG CAAAAACATT CGAGCAATAT CGCAAGTTGT ACGCCACTTG GCTTGAGTTA
ACCCAAAAAG CGGCTGATGA CGCTTTGCAA ACGATTGAGT TAACCAGCGA GCTTGCTAAG
GTGCGCCTGC AATGGCGTGA TAAAAATCAG CAAGTGAAAG ATGTCACAGG GCTTTTGTCT
CAGGAGAAAC ACATTAGCTC TCTCGACGCT GAGCGGGCTA AATTGCAACC CGGCGAGCCT
TGCGCCCTGT GTGGCTCAAT TGAGCACCCT TTAGTGAGTG AATATCAAGG CATCAATGTT
TCTGACACTG AGCAGCGTCA GCAAAAGCTA CTACAAGAAT TAGAGCAATT AAAACTTGCA
GGTGAGGGGC TTAATTTAGC GCTATCTAAG CTTGAGCTGT CTTGGGAGCA CACACAGCAG
CAATTAACTC ACTGCATCAG CGAGCAACAA GAGTTACGTA ATCATTGGCA CGCTTTATTC
GCACAACTTG GGCTTTCTCT AAATGAGTTT GCCCTGCCAG CACCGTGGCG TAGAGCAAGT
GATGGTGATA AAGCAAGCAT CAATCCTGGA GTCAATGAAG CTGCCTATTT AGAGGCTCTT
GAGAGTCAAT TACGATCTTT TATTGTTAAG GCAACTGAGG AACAACACAA GCTCAGTGAG
TGCATAACTC AGCTTTCAGG TATGCAGAAC CAAGAGGCGA CTGAGCTTAA AGCGTTGCAG
CAAGCAGAGG CTCAGGCTCA AAGGCTAGTC TCAGCGCGAG ACGTACTCAG CGCGGAGCAG
TGCAATATCA CTCAGGGCAT TGAGGAGCAA ATTCGCCGAA TTAACAGGCT TGAAGAGCAG
CAACAGATGC TGATCCAAAA CCTAAACACT GAATGTGGCC AATTTGGCGT TACTTTACCA
GCACGGGAGA GCAGCGCTTC TGAATATCAA CACTGGTTAA ATGAGCTCAG TGCTAATTTA
CAACAGTGGC GCTTGGCGCA GCAGCAATTA ATCCTAAAAC AGCAACAGTT AGAGGTTTTA
CAGCAAAGTA GCAGCAGTAT TTCCCAGCAG CTTAATAAGA ACCGCACTCA AATTGAGACT
GATAAGCAGC AGTTGATGAC CATAGAAGCT GAACTTAAGG CGCTGAATGC CGAGCGGTTT
GACTGCTTTG GTGACAAAGA TATAGAGCAT GAAAAAGACC AAGCAGAAAT TAACAAACAG
CAAGCCGAAA ACGTAAATGC AGCACTTGTC AGCAAGCAGC TGGAAGCCAG TACGCTAGAA
AACACCATCA AGACGCGTTT AGATAGCTTG AATGAACAGC TCACTCACCT TGTGACAAGC
TTAACTGAGC ATCAACAACA TTGGCAAAAT GCCTTAGATG CTAGCCCGTT TAGTGATGAA
GCAAGCTTTA GCGCCGCTTG TTTAAGTCAG GCGGACAGGC AAGCTCTGCA GACGCTGAAA
AATGAGCTTG ATACTCGCTT GCATCAACAG CAAGCTCTGG CGCAACAAGC CAAGCTTGGG
CTGGAAAAGT TACAACAACG AGGGCTGGCG GCAGAGTATC AGCTGTCATT GGCGCCAGCT
CTTCGTATAG AGCATGGCGA GCTTGAGCAA TTGCAGCAGC AATTGACACA GGAGTTGTGG
CAGATAGAAC GCGTTTTAAC AGAGGATAGC GAGCAACAAG CGGCGCAAGG CTCCTTGGTG
AGTCAGCTTG AGGCTGCGAA ACAGTCCTAT GATGATATGG CGTATTTGCA TGCCCTTATT
GGCTCGCAAA AGGGCGATAA ATTCCGTAAG TTCGCCCAAG GGCTCACACT CGATCACCTT
GTGGCACTGG CTAACCGACA GCTTGGGCGT TTGCATGGGC GCTATTTATT AGAGCGCAAA
GGCAGTGATG CCTTGGAATT ACAAGTGATT GATACCTGGC AAGGGGATGC GCTAAGGGAT
ACCCGTACGC TTTCAGGGGG AGAGAGCTTT TTGGTGAGTT TAGCCTTGGC CTTAGCGTTA
TCAGATCTGG TCAGTCATAA AACCAGTATT GACTCACTCT TTTTAGATGA AGGCTTTGGT
ACCTTAGACA GTGAAACCTT AGACATGGCC CTCGATGCCT TAGATAACTT GAATGCCTCA
GGTAAGATGA TTGGGGTGAT AAGCCATATC GAAGCCATGA AGGAACGCAT TGATGTACAG
ATAAAAGTAA ATAAAATGAA TGGCCTAGGT ATTAGTCGAT TACAGAGTCA ATACCAATAT
CAAGCAGTTT TAGAATGA
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| Protein sequence | MKILSLRFKN INSLKDEWKI DFTLSPFKEN GLFAITGPTG SGKTTILDAI CLALYHRTPR
LSVISKSTNE LMTRGTGSAL AEVEFEVKGK AYRAFWSQRR SRDLADGNLQ DAQVELAELE
SGVILASQIK QKTELVESIT GLDFARFTRS MLLSQGDFAA FLNASANERA ELLEELTGTE
IYSLISERVH LEFGEQKHRL NLLKVQLDSV KLLSAEEREA KLASALALKE TLAQKQQQLL
ALVDCLTWCD AMQAQTQLVE QSEQGLQAAE EAIRDEKNQL QRLADSEPAQ GLAPLFERKQ
QLSQQHQALD KQVAELGQQL VSAQQTLKEL SEQQSAAATA LIVEKQAQQA LHHLIDTQVQ
PLEQKLAQSR FKLTQCQQAL DKSRTTEDEL NHELSAVQAR KQDLTLEIKE LSTLLSQYPQ
GQALGEQLSG WKTQVAQLIE LEQQRGELDI QQRQLQQSST LCKQNLETNQ QQLTQAQQVQ
INASHLLAAT TAQINELLSG REIHQLQQEY QQCLDSQHGR SELAKTFEQY RKLYATWLEL
TQKAADDALQ TIELTSELAK VRLQWRDKNQ QVKDVTGLLS QEKHISSLDA ERAKLQPGEP
CALCGSIEHP LVSEYQGINV SDTEQRQQKL LQELEQLKLA GEGLNLALSK LELSWEHTQQ
QLTHCISEQQ ELRNHWHALF AQLGLSLNEF ALPAPWRRAS DGDKASINPG VNEAAYLEAL
ESQLRSFIVK ATEEQHKLSE CITQLSGMQN QEATELKALQ QAEAQAQRLV SARDVLSAEQ
CNITQGIEEQ IRRINRLEEQ QQMLIQNLNT ECGQFGVTLP ARESSASEYQ HWLNELSANL
QQWRLAQQQL ILKQQQLEVL QQSSSSISQQ LNKNRTQIET DKQQLMTIEA ELKALNAERF
DCFGDKDIEH EKDQAEINKQ QAENVNAALV SKQLEASTLE NTIKTRLDSL NEQLTHLVTS
LTEHQQHWQN ALDASPFSDE ASFSAACLSQ ADRQALQTLK NELDTRLHQQ QALAQQAKLG
LEKLQQRGLA AEYQLSLAPA LRIEHGELEQ LQQQLTQELW QIERVLTEDS EQQAAQGSLV
SQLEAAKQSY DDMAYLHALI GSQKGDKFRK FAQGLTLDHL VALANRQLGR LHGRYLLERK
GSDALELQVI DTWQGDALRD TRTLSGGESF LVSLALALAL SDLVSHKTSI DSLFLDEGFG
TLDSETLDMA LDALDNLNAS GKMIGVISHI EAMKERIDVQ IKVNKMNGLG ISRLQSQYQY
QAVLE
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