Gene Sden_2472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2472 
Symbol 
ID4018972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp2948811 
End bp2951330 
Gene Length2520 bp 
Protein Length839 aa 
Translation table11 
GC content47% 
IMG OID637956500 
Producthypothetical protein 
Protein accessionYP_563475 
Protein GI91793824 
COG category 
COG ID 
TIGRFAM ID[TIGR03502] extracellular lipase, Pla-1/cef family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00113127 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGAC TCATTTTGGG TGTTGCAATT GCATCTGCTC TTGGACTCAC AGGCTGTGGC 
GAAGATAGCA CAAACGAATT AATTGAAAAG GCAGTGCCGT TAATCCCAGT TTCGTACATT
GATTTCGATC CGGGCAACAC TGACCCGGCG AAACGAATAT TACCATTACC TAATGATCTG
CTCTTCAGCG GCACCAGTGA TGGCACCATC AATATGCCAA ATAATGTAGA AGCGGGTGGC
GACTATGTTA ATCCTAAGAT TGCGTTGGGT GCTCTGGATG GCTGGTCTAC CACATCACCT
ATCTCTATTG ATATTAAATT AGCTAAAGAT CATGATGGTA CAGAGCTAAC ACTGGATGAA
GCTTCCGTGG CCCAAGCGGG TGCGGTACGT TTATTTGAAG CCACAGTGGG TGGTGTGTTG
TCTGGCGATC CTGAATGTAA AGCAGCAACG TCAGTGTCTG CCTGTAAAGT GGGTGCAGAG
CTTGAATACG GGGTTGATTT TATTTCTGTG GGTTCAGGCA GCAAAATCGC TATTATTCCA
CTTAAGCCAT TAAAGGCTAA ACAATCCTAT ATTTACGCCA CCACTAAGCT TATTCAAGAT
TCTAAGAATC GCGCCATCGA AGCGTCAGCC ACTTACAACT TGTTGAAGCT GGATATGGAA
ACCAATTTCT TAGCAACACC CAGTCAACGT TTACTGCAAA CTTTAGTGAA CAGTTATGAA
AAGGGCATGG CCGCCGAGCA TGGTGTTGAT GCCAGTGAAA TTACTTACTC AGGGCTGTTT
ACGACGCAAT CGGTTGCCGA TGTGTATGAG ACAACTAAGT TATTAATGGC GTCCAGCGCG
CCTTATAAGC CTTCTTTCGT GCAGACGCCG ACCCCTATGG GGATAACCGT TGCCCAAGCG
CGTGGGATGA CGCCCTCCAC TGACAGAAGC TATGTGATGG CTAATATGGC GGACTTGTAT
ACCGCCACCA TTCGTGTGCC TATCTATGGT AATTGCTCTT CAGCATCCTG TGTGCTAGAT
AATAATTCAG TTGAAGAAAA ACGAAAGCGC TTAAATAATA GCCGCTGGTC AGCTCAAGGT
GATAGCCCGC TTTCAGTGTT ATTGGCAGTG CAAACAGGAA CCATGAGCAC GGCACATTTT
GCTACTCAAG CCATAGCCCA AGGTGTCGAC CCGGCTGCGG CGCAAACTAA CCCAGCCCTA
CTTGTCGGTA AAACGTTCAC CTTAAATGAC GGTACTGCTG CGGATAAGAC CAAGCATTTA
ACCAAATTTA ACCCTATACC TGCAATCAAG GGTTATGAAA ATATTAAGCT GCAAATTACC
CTGCCAAACG GCCCTAAATT AGCGGCCTTT TTAGCGGGAG AAGGTAAAAC CTTCGTGCCG
CCCACCAATG GTTGGCCTAC AACCATGGCT TTACATGGTC TAGGCGGCGG CAAAGAAATG
GCATTGTCTT ATGCCGGAAC GTATGCGGCA GCGGGTATTG CCACTATCGC TATGGATATG
CCACTGCACG GTGAGCGTTC GTTTGACGCT AATAGTGATG GTATCTATGA AGTTACTGCA
ACGCTAGAGG ATTACGGCAA AGTTGTCGGT AAACCTGATG CCTTTAACAA AGGCACTATC
TTAGATTTTA TCAATATTGC TAGCTCATTG ATGGTGCGTG ATAACTTCCG TCAGGCAACC
CTTGATCACT TAAGCTTGCG GCTATTACTT ACCGGGATGG CACAACAACT TGCAGCCGCG
AGTCAGCCAC AAGTGTTTGA TGTGTCTAAA ATCAGTGTTC AAGGCTTAAG TCTTGGCGGC
ATAGTCGGTT CAACCTTATC AACTTACGCC AGTACGGGGC TTAAAGATCC TACAACAGGT
GCTGATTTAG GCAATCCATT TGCGGTAAAT GCCGCGTCTT TAGTGGCGCC AACTGGCGGC
TTAGCGGGTT CATTTGCAGG TTCAGCAAGC TTTGCGCCAG TGTTATTTAC TAACGTGACT
AAGGATCCGA CCTTTATTGC ACTAGTGGCT GAGAAAAACA TAGAAGGTTA TCTCGAAGGT
ACACCTGAGT ATACAGCCCT TGTGCAAGCC GTGTACGCAG GCTTTATCCC AGGCTTTGCC
TTAGCGATTC AAACAGCAGT CGACTCAGTT GACCCAGTTA ACCATGGCGC TAAGTTAGCG
GCATTAGGTT TACCGGTTCA TTTGATTGAA GTGGTCGGTG ATGGCGCGGA CAATAAGCCT
GATCAAACCC TACCTAATTC AGTTGCAGGT TTCCCGCTAT CAGGCACTGA GCCTTTTATC
CGCTCATTAG ATCTAGGCTG TGTTGCTTCA ACAACTCAGG GTTCAGGTGC GGTGCGTTTC
GCTAAAGGGC ATCACAGCTC AATAGTGGAC CCCAAAGAAA GCTCTGCCAC AGATGGCATG
GCGTTTGAGG CTACCAAAGA AATGCAGAAG CAGGTAGCAG GTTTTGCTCA GTCAGCAGGC
ATGGGAGCAC CAACCATAGT TGTGACAGAT ACTAAGGTTA TTGCTGCCTG TGGTCGCTAA
 
Protein sequence
MKRLILGVAI ASALGLTGCG EDSTNELIEK AVPLIPVSYI DFDPGNTDPA KRILPLPNDL 
LFSGTSDGTI NMPNNVEAGG DYVNPKIALG ALDGWSTTSP ISIDIKLAKD HDGTELTLDE
ASVAQAGAVR LFEATVGGVL SGDPECKAAT SVSACKVGAE LEYGVDFISV GSGSKIAIIP
LKPLKAKQSY IYATTKLIQD SKNRAIEASA TYNLLKLDME TNFLATPSQR LLQTLVNSYE
KGMAAEHGVD ASEITYSGLF TTQSVADVYE TTKLLMASSA PYKPSFVQTP TPMGITVAQA
RGMTPSTDRS YVMANMADLY TATIRVPIYG NCSSASCVLD NNSVEEKRKR LNNSRWSAQG
DSPLSVLLAV QTGTMSTAHF ATQAIAQGVD PAAAQTNPAL LVGKTFTLND GTAADKTKHL
TKFNPIPAIK GYENIKLQIT LPNGPKLAAF LAGEGKTFVP PTNGWPTTMA LHGLGGGKEM
ALSYAGTYAA AGIATIAMDM PLHGERSFDA NSDGIYEVTA TLEDYGKVVG KPDAFNKGTI
LDFINIASSL MVRDNFRQAT LDHLSLRLLL TGMAQQLAAA SQPQVFDVSK ISVQGLSLGG
IVGSTLSTYA STGLKDPTTG ADLGNPFAVN AASLVAPTGG LAGSFAGSAS FAPVLFTNVT
KDPTFIALVA EKNIEGYLEG TPEYTALVQA VYAGFIPGFA LAIQTAVDSV DPVNHGAKLA
ALGLPVHLIE VVGDGADNKP DQTLPNSVAG FPLSGTEPFI RSLDLGCVAS TTQGSGAVRF
AKGHHSSIVD PKESSATDGM AFEATKEMQK QVAGFAQSAG MGAPTIVVTD TKVIAACGR