| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2443 |
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| Symbol | |
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| ID | 4018942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2909680 |
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| End bp | 2912463 |
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| Gene Length | 2784 bp |
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| Protein Length | 927 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637956470 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_563446 |
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| Protein GI | 91793795 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCAA ATAAAAGCTT AATAAGTTGC GTGATATTAA GTCTATTGTC CAGCATGGTG
TTAGCACAAA CGGTCCAATA TACTTATAAT GATTTGGGAT TAGTGCAAAC TATTGATGGC
CCTAGAATTG ATGTCAGTGA CGTAACACGG TTTGATTATA ATTCCAATGG CCAGCTCAGT
CGTATCACCA ATGCTTTAGG CCATAAAGTG GAGTACCAAA ACTACGATGC TTTTGGCTAC
CCACAAAAGA TCATCAATGC TAACGGCGGT CAAGTTACAC TGACCTATGA TCGCCTCGGC
AATATACTGA CTAATACTGT GCATACTCGC TTAGGTGCTA ATAAAACGAC TTACACATAT
ATAGTGGGTA CTTCGTTAGT GCAATCCATT AAAAACTCAG CAAATTTTAC TCTTACCTAT
AGCTATAATA ACGCAAACCA ATTAACTTCA ATTAATGGAA GTAATAGAGA ACGCATAGAA
TTTGAGCTCG ATGCCGCTGG CAATATCCTT TCTAGCAAAA TAAAAAATAC TGCAACAAAC
ACGTTAATGT ATGAACATAC TAGGCAATAT GATGAGCTGA GTCGAATAAT CAAAGATGTG
GGTGCTGCAA ACCAAACAAC TCAAATCGCC TATGATGCAG AAGGAAACCC GCTGAGTTTA
ACCGATGCTA AGCTCAATCC AACCGAGCAA ACTTTTGATG CCCTCAATCG GGTAAAGCAG
CTGAAAGATG CCAAGTTAGG CCAAACCCAA TATTCCTATA ACGGTAAAGA TCAAATTACC
AGTGTCACTG ATGCCCGCGG TAACACCACA AGCTATGAGT ACGATGGACT TGGGCAGCTG
CTTAAAACCA CTAGCCCAGA TACTGGCATC ACTCAGTTTG TTTACGATGA AGCAGGAAAT
CTGACTCAAA AGACTGACAA CAAAGGCAAT ATCGTCACTT ATACCTTCGA TGCCCTTAAC
CGTTTATTGT CAGCTGAGTT TGCCGCTGCG CCAGAGTTAA ATGTGAACTA TAGCTATGAT
TCGACAGACG ATGACAATCA TGGACTCGGG TTATTGACGC TAATGACAGA CAGCAGCGGC
ACGACGGCGT ATCGCTATAA TCAGCAAGGC CAAGTCATCA GCGAAACCCG CAACATCCTG
GGCGCAGATT ACATCACAAG CTACCAATAT GATGTCAACA GCGCCTTAAA ACAGATGATC
TACCCTAGTG GCAGAAGCTT AAGCTATCAA TATGATAACC AGCAAAGGCT AATTGCGATT
ACTACCCAAT CCGCAATTAG CTCTCAGGCG CAGCCCTTAA TCAATAATCT CAGTTACAAG
CCTTTTGGGC CAATCGCTTC ACTTCGTTAT GGTAATAACC TAACGAACAC TTACAACTAT
GATCTTGATT ATCAGCTTAT TGATATCAAT AGTGGCATCC AACAATTGAG TTATGCTTAT
GATGCCAACG GCAATATTGA AACCATCAAC AATACCCTGT TTAGTCGCCA GAGCCAGCAA
TTTAATTACG ATGAGCTTAA CAGGCTAACT CAAGCTAGTG GCGATTATGG TAGCTTGAAC
TATGCCTATG ATGCTGTACA TAACCGCACG GCAAAGCATG CCCTGCAAGT CGGCCAAGCA
CCTGCCGAGG TTAGCATAGA CAGTTACACT TATGCCGCCG ACAGTAATCA GCTTCAACAA
GTCAGCAAGT CGGCCCCCGG CATCACAACG CAGCGTGACT TTAGTTATGA TGCCAATGGG
CAAATAATCA CAGATATAGA TGATACGCGA GCATTAACAC TGAATTACAA CGCTCAAAAT
CGACTCGACA CACTGACTAA TAACGCCTTA CCTGTGGCGC AATACAGCTA TAACGCCTTA
GGGCAGCGAG TACAGAAAAA TGTCAACGGC AAAGTCACTC ACTTTCATTA CGACCTCAAT
GGGCAGCTTA TTGCAGAAAC CCTCGCCGAC GGTACTTTAC TGCGTGAGTA CTTCTTTGCT
GGCAGACAAC AGATAGCGAC AGCGATAACA AACGACAACC AAGGTTCCAC CACAACCTAT
GTCTACTATG TCCACACCGA CCACTTAGGC ACGCCAACGG CGCTGACAGA CTCGACAGGC
ACCGTACAGT GGCAAGCTCA CTACACGCCA TTTGGGCAAA CCATAGTGGA CATAGACAAG
ATCAAGCAAG CGATACGTTT TCCGGGTCAA TATTATGATG AAGAATCTGG GTTACATTAC
AACTACTTTA GGGATTACGA TCCCGAATTG GGTAGATACA TTCAGTCAGA CCCGATTGGT
TTAGCGGGTG GGATTAATAC CTATGGGTAT GCATACCAGA ATCCTGTCAT GAATACTGAT
CCAACAGGGT TGTGGGTTCC ACAAGCAATT GGTGCACTAG TAAATATGGG CTATGAAGGG
TATACCCAAT ACCAATCTGG TAATTTTAAT ATGGGAAGGC TCTTTGTTGC AGGGGCTACA
GGGGCATTAG GTGGTTTTGG TTCCAGTGCT ATCAAAGCTA TCGGGTTTGG TTCATTAGCT
GGTGCTACTA ATTCTGCATA TCAAGAAATT GATAGTGTTA ACATGGGATG TAAAGATGAT
ATTGACTCTT CAAAAATACT TCGTAGCGCA TATTTAGGTG GAATAGGTGG AGGTATTGGA
TACGGCATAG GACATGTAGG TAAAAACATT TATAAAGCAC CGAATACTGC TATTTTTGAT
CCAGCCATTA AAGTGAGTGT AAATTATGGA ACTTATGGAA GTGCCGCTGG TGCTGCATTA
GGAGGTATAA TTGGAAATCA ATAA
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| Protein sequence | MKANKSLISC VILSLLSSMV LAQTVQYTYN DLGLVQTIDG PRIDVSDVTR FDYNSNGQLS
RITNALGHKV EYQNYDAFGY PQKIINANGG QVTLTYDRLG NILTNTVHTR LGANKTTYTY
IVGTSLVQSI KNSANFTLTY SYNNANQLTS INGSNRERIE FELDAAGNIL SSKIKNTATN
TLMYEHTRQY DELSRIIKDV GAANQTTQIA YDAEGNPLSL TDAKLNPTEQ TFDALNRVKQ
LKDAKLGQTQ YSYNGKDQIT SVTDARGNTT SYEYDGLGQL LKTTSPDTGI TQFVYDEAGN
LTQKTDNKGN IVTYTFDALN RLLSAEFAAA PELNVNYSYD STDDDNHGLG LLTLMTDSSG
TTAYRYNQQG QVISETRNIL GADYITSYQY DVNSALKQMI YPSGRSLSYQ YDNQQRLIAI
TTQSAISSQA QPLINNLSYK PFGPIASLRY GNNLTNTYNY DLDYQLIDIN SGIQQLSYAY
DANGNIETIN NTLFSRQSQQ FNYDELNRLT QASGDYGSLN YAYDAVHNRT AKHALQVGQA
PAEVSIDSYT YAADSNQLQQ VSKSAPGITT QRDFSYDANG QIITDIDDTR ALTLNYNAQN
RLDTLTNNAL PVAQYSYNAL GQRVQKNVNG KVTHFHYDLN GQLIAETLAD GTLLREYFFA
GRQQIATAIT NDNQGSTTTY VYYVHTDHLG TPTALTDSTG TVQWQAHYTP FGQTIVDIDK
IKQAIRFPGQ YYDEESGLHY NYFRDYDPEL GRYIQSDPIG LAGGINTYGY AYQNPVMNTD
PTGLWVPQAI GALVNMGYEG YTQYQSGNFN MGRLFVAGAT GALGGFGSSA IKAIGFGSLA
GATNSAYQEI DSVNMGCKDD IDSSKILRSA YLGGIGGGIG YGIGHVGKNI YKAPNTAIFD
PAIKVSVNYG TYGSAAGAAL GGIIGNQ
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