| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2437 |
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| Symbol | |
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| ID | 4018936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2903628 |
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| End bp | 2905700 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637956464 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_563440 |
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| Protein GI | 91793789 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACGAAG TATTAAAAAA AGATCAAATT ACCAGTGTCA CTGATGCCCG CGGTAACACC
ACAAGCTATG AGTACGATGG ACTTGGGCAG CTGCTTAAAA CCACTAGCCC AGATACTGGC
ATCACTCAGT TTGTTTACGA TGAAGCAGGA AATCTGACTC AAAAGACTGA CAACAAAGGC
AATATCGTCA CTTATACCTT CGATGCCCTT AACCGTTTAT TGTCAGCTGA GTTTGCCGCT
GCGCCAGAGT TAAATGTGAA CTATAGCTAT GATTCGACAG ACGATGACAA TCATGGACTC
GGGTTATTGA CGCTAATGAC AGACAGCAGC GGCACGACGG CGTATCGCTA TAATCAGCAA
GGCCAAGTCA TCAGCGAAAC CCGCAACATC CTGGGCGCAG ATTACATCAC AAGCTACCAA
TATGATGTCA ACAGCGCCTT AAAACAGATG ATCTACCCTA GTGGCAGAAG CTTAAGCTAT
CAATATGATA ACCAGCAAAG GCTAATTGCG ATTACTACCC AATCCGCAAT TAGCTCTCAG
GCGCAGCCCT TAATCAATAA TCTCAGTTAC AAGCCTTTTG GGCCAATCGC TTCACTTCGT
TATGGTAATA ACCTAACGAA CACTTACAAC TATGATCTTG ATTATCAGCT TATTGATATC
AATAGTGGCA TCCAACAATT GAGTTATGCT TATGATGCCA ACGGCAATAT TGAAACCATC
AACAATACCC TGTTTAGTCG CCAGAGCCAG CAATTTAATT ACGATGAGCT TAACAGGCTA
ACTCAAGCTA GTGGCGATTA TGGTAGCTTG AACTATGCCT ATGATGCTGT ACATAACCGC
ACGGCAAAGC ATGCCCTGCA AGTCGGCCAA GCACCTGCCG AGGTTAGCAT AGACAGTTAC
ACTTATGCCG CCGACAGTAA TCAGCTTCAA CAAGTCAGCA AGTCGGCCCC CGGCATCACA
ACGCAGCGTG ACTTTAGTTA TGATGCCAAT GGGCAAATAA TCACAGATAT AGATGATACG
CGAGCATTAA CACTGAATTA CAACGCTCAA AATCGACTCG ACACACTGAC TAATAACGCC
TTACCTGTGG CGCAATACAG CTATAACGCC TTAGGGCAGC GAGTACAGAA AAATGTCAAC
GGCAAAGTCA CTCACTTTCA TTACGACCTC AATGGGCAGC TTATTGCAGA AACCCTCGCC
GACGGTACTT TACTGCGTGA GTACTTCTTT GCTGGCAGAC AACAGATAGC GACAGCGATA
ACAAACGACA ACCAAGGTTC CACCACAACC TATGTCTACT ATGTCCACAC CGACCACTTA
GGCACGCCAA CGGCGCTGAC AGACTCGACA GGCACCGTAC AGTGGCAAGC TCACTACACG
CCATTTGGGC AAACCATAGT GGACATAGAC AAGATCAAGC AAGCGATACG TTTTCCGGGT
CAATATTATG ATGAAGAATC TGGGTTACAT TACAACTACT TTAGGGATTA CGATCCCGAA
TTGGGTAGAT ACATTCAGTC AGACCCGATT GGTTTAGCGG GTGGGATTAA TACCTATGGG
TATGTTGGTG GGAATCCAAT AAATGCGATT GACCCTCTTG GATTAGATAC TGTATTTATA
TGGAAACCGG GTAATTACAC TGATAGCTCA GGAAATACCT ATTCAAGTGC ATACGGTCAT
GCGTCAATCA TGAGTGACTA TGGAACATAT GTTAGTCATC ACCCTGACAA ATCTGGTGTA
AACCCTTTTA ACTCTTTGTT TAGAAATTAT ATGCGGGACA AAGCTCTTTA TGGCAGGGAT
GCGGACTTTA TCATTTATGT AGATAACCCA AACAAATTAG CTTCGGATAA GTTTGCGAAA
GATTATTTGT CCTCTGAAGA CTATTGGGGA GTTTTCGGAA ATTGCACTGA TGCAGCTCGT
TCAACATTAA ATGCTGGTGA CTCAGTTATT CCCAACTTGA ATATTGGCTT TGATAATGCA
GTATCGTACC CCGCAGAGCT AGAAAGGGCT TTAAGAGGGG CATATTGGCT GAATAGAAGA
ATTATTAGGG ATGTTAACCC TTTTAATCCA TAA
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| Protein sequence | MYEVLKKDQI TSVTDARGNT TSYEYDGLGQ LLKTTSPDTG ITQFVYDEAG NLTQKTDNKG
NIVTYTFDAL NRLLSAEFAA APELNVNYSY DSTDDDNHGL GLLTLMTDSS GTTAYRYNQQ
GQVISETRNI LGADYITSYQ YDVNSALKQM IYPSGRSLSY QYDNQQRLIA ITTQSAISSQ
AQPLINNLSY KPFGPIASLR YGNNLTNTYN YDLDYQLIDI NSGIQQLSYA YDANGNIETI
NNTLFSRQSQ QFNYDELNRL TQASGDYGSL NYAYDAVHNR TAKHALQVGQ APAEVSIDSY
TYAADSNQLQ QVSKSAPGIT TQRDFSYDAN GQIITDIDDT RALTLNYNAQ NRLDTLTNNA
LPVAQYSYNA LGQRVQKNVN GKVTHFHYDL NGQLIAETLA DGTLLREYFF AGRQQIATAI
TNDNQGSTTT YVYYVHTDHL GTPTALTDST GTVQWQAHYT PFGQTIVDID KIKQAIRFPG
QYYDEESGLH YNYFRDYDPE LGRYIQSDPI GLAGGINTYG YVGGNPINAI DPLGLDTVFI
WKPGNYTDSS GNTYSSAYGH ASIMSDYGTY VSHHPDKSGV NPFNSLFRNY MRDKALYGRD
ADFIIYVDNP NKLASDKFAK DYLSSEDYWG VFGNCTDAAR STLNAGDSVI PNLNIGFDNA
VSYPAELERA LRGAYWLNRR IIRDVNPFNP
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