| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2351 |
|---|
| Symbol | |
|---|
| ID | 4018845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2789466 |
|---|
| End bp | 2793593 |
|---|
| Gene Length | 4128 bp |
|---|
| Protein Length | 1375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637956374 |
|---|
| Product | exodeoxyribonuclease V, gamma subunit |
|---|
| Protein accession | YP_563354 |
|---|
| Protein GI | 91793703 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1330] Exonuclease V gamma subunit |
|---|
| TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCACGT TAATTCAATC CAATCAGATG GAAGTATTAT CTGAACAATT AGCCAAACTG
CTGGCAACCC CATTAGATGA GACAAACCTG CTGGCCAGTG AGCATGTGCT AGTGCAAAGC
CCGGGCATGT CCACTTGGCT TAGGCTCGAA GTCGCTCGCC ACAATGGCAT AGCTGCCGCC
CTTGAATTTC CGCTGCCCTC AAGTTTTATT TGGCAACTTT GCCACACCCT GCTGCCCGAC
GTCCCCAAGG ATAACGCCTT CACAAAACCT GCCATGACCT GGAAGTTGAT GGACTTATTG
CCGCGCCTAC TGGACGATGC TGACTTTGCC CCTTTGGCGA ATTATTTAAC TACTGAGTTG
GCCACTGAGC TAGCCCCTGA GTTAGCTCCT GAATTAGCCA CTGAAATAAA ACCAGATCAA
GCCGCTGCAG CGCCTGACTC AAGATCCCAA GCCATTGTTT TATCTGCCGC GCAAGATGCC
ATCAAGCGCT ATCAACTATG CAGCCGCATC GCAGATATCT TTGACCAATA TTTGGTCTAT
CGCCCCGAGT GGATCTTAGC TTGGGAGCAA AACAAACCAC TGACTTCATT AGATAATAAA
CTCAAACTCG ATGACAGCCA GTTATGGCAG CCCAAATTGT GGCGCGCACT TATCGACTAT
AACCGCGATG AACTGGGCGC CAGTCCCTAT CACAGGGCAA ACTTACATGA ATCATTGCTT
GAAGCCTTAG CCGATGAGCA AAGCTCTGTC GCCAACCTGC CCCAAAGGCT ATTCGTGTTT
GGCATTTCCT CCATGCCGCC ACAAACCTTA GAAATACTGC ATCAGCTGGC AGGGCGTATT
CCAGTGGTGA TGTTAGCCTT AAGCCCTTGC GAGCATTATT GGGGGGATAT CATAGACCCC
AAAACCCGCG CCCGCATGGC ACTGCAATAC GCAGATAAAA AACAGCTAGC ACAGGATTGG
GAGTCAAGCC TTGAGGTGGG TAACCCGCTG CTTGCCAATA ACGGTAAGCT TGGCCGTGAG
TTACTGGATC TGATGCTCGC CTTGCCAAGC GAGCACACAG ATTTTGGCTA TGACTGTTAT
GTCAAACCTT GGGATATTAA TCTACATTCA GACGATGAAA ATGATGCTGT CCCAGTAAAT
ACCCCTCAAA ACGCTAAGTT ACTTCATGGG GTGCAGTATG ACATTCTGCA AATGGAAACC
TTAGGCGTGA GCCTAGGCCC AGATGCTGCG CTGTATAACA ATATTCCTAA TCGCCGCTTA
TTACAGCCAG ACGATGACTC AATCACCATC CGCACCTGTC ACAGTCCCTT AAGGGAAGTT
GAAACGTTAC ACAATCATTT ATTGGCTATG CTGAGCCGCT GCCCGCAGCT GCATCCCAAA
GACATAGTTG TCATGATGCC AGATGTGGCC GCCTACGCCC CCTATATTGA CGCCGTGTTT
GGCACAGCCA ATGCTGAAGC GTCTGGGATT GATGGCGCCC GCCAACAAGG CAATAGTTAT
ATTCCCTATG CCATCGCCGA TCGCGGCGCT GCGGCAGAGT CACCACTTAT CAATAGTTTT
TTAAGCTTGC TAAACATCAA TCAGAGTCGC TTTGCCTTAA CTGAAATCAT GGGGATTTTA
GAAGTCCCCG CCATTTTGAG GCGCTTTAAA CTCAGCGGTG ATGAGCTGAG TCAAATTCGC
CTCTGGCTAG ATGAGGCCAA TGTCCGTTGG GGCCGAGATG AGCACAGCCG CGCCGCCTTA
AACCTGCCGG CTTTTGAGCA AAACTCTTGG GCTTTTGGCA TTCGAAGGTT AATCCTTGGC
TACGCTTTTC ATGATGGAGC GCCCCTGTAT CAAGACACCT TATTAGTGCC AGGTCTTGAG
GGCCAATCAG CCCAAGCCCT TGGCAAGCTA ATGAATTTCC TTGAAACCTT AGATGATTAT
CGCGCCCTGT TTGCCGCCCC CTGCACCACT TCTTCGCGCC TGTTTGAGCT GCAAACCTTG
CTACAAGATA TTTTCGAGGC CGATGACGAT GAACGGGAAG AAATTCAAGC CATTAATGAA
GCTATCGCTA AATTAAGCGA GGAGTTAAAC GGCGCCGGCC ATCAAGGCAT GCTGGATATT
GAAGTGCTTA AAATCTGGTT TAACCAACGC TTAAGCGAGT CTCGCGTGGG TCAGCGCTAC
CTTGCGGGTA GCGTCAATTT TTGTACCTTA ATGCCCATGC GCTCAATCCC CTTTAACATG
GTGTGTTTGC TGGGCATGAA TGACGGCGAC TATCCTAGGG TGCAACACCC GGTGGGCTTT
GATTTAATGG CGCATTTTGG CGCTAAAAAA GGTGACCGCT CGCGCCGCGC CGATGACAGA
TACTTATTTC TCGAAGCCCT ACTCTCTGCC CGAGAGCAGC TGTACATCAG TTATATCGGC
CAGAGTGAAC GGGATAATAG CGAACGTATC CCTTCGATGT TAGTGTCTGA GTTAATTGAA
TATTGTCAGC TTTGCTACCT AACCCCAGAG ATGAAAGAGC AGCTCAGCAA ACTTGATGAA
GAACAAATCC TTGCCTTGAG CAAACCTTGT GATGATGCCC TGCTCGCACG GCTTATTCAG
GCGCAGCCGT TACAGCCTTT CGATCCTAAG CTGTTTAGAG ACAATCAAGC CCTAGGCATT
GCCCTGCAGC AGAGTTATCA CAGCCAGTGG TGCCCGCCGA GCACGCCAGC TAATAAAACA
ACCACTGCGC CAGCCTCAGC TGCGGCATCC GGTTCAGCCT CTGCTGAAAC CTCAGTTAAC
ACTTGGGTTA TGAATAGTTC TGGGCGTTTT TTAGGGCCAA ACCAAAGCCT GCCTCAGTCA
ATATTAGCAG ACAGCCTGTG GCCGCAATGG CACAGTGATT TGGAGGAAAG AGCGGTATTT
GCAGCAACGG ATGCTGAGCT TGAGCTATCT GCCCTACTGA GATTTTTCAG AAATCCCAGC
CAGTTTTTCT TTAATCGCAG CCTAAAAGTC GATTTATCCT TAGACATTCA AGCCGATGAC
AATGATGAGC CTTTTAGCCT GAATGCGCTG GAGCGCTACC TGTTACAGGC GAAACTGTTA
GATAAAATAT TAGCACCTGA CCTTGATACC AGTGACCTTG ATAACAATGG CGATGATAGG
AAGAAAACGC CTGAAGCAAG CCTTACCCAA GCACTAAAAG CCGCGGGCAG TTTACCCATG
GCACCCTTTG ATGAGCTATT ACTGAGTCAG TACCAAAGGG ACATGGCGCC GCTGATTGGC
AGGGTGCAAT TTATGCGGGG CGAGCAATGT GAGCCAAGAA GCCTTAATCT TGAACTGGAA
TTTAGCTTCA GCCCCGGGCA AATTCTGGCT AACAGCCTTG AGCTGAGTGA AATTAGCCTT
GAGCCTGCAC TAATAAACAG CCCAGAGCTC GCTCACAACG CCGCTCAAGC GCCACTTAAA
CTCACCCTAC TTGGGCGCAT CGACGATATC TTGCCCAAGG GCCTGATAAA TTATCGACCC
GGCGCCGCCC ATGGCCGTGA TTTGGTAAGG GTATACCTAA GGCATTTATG CCTCAATGCC
AGTGGTCAGC AGCAGACCAG TTATTTACTG GATATGGCGC AATTTCATAG CTTTGCACCA
ATAACGCCAG CCCATGCAAC AGCGCAACTT AAGGCCTTTA TTTTGGCTTA TATTCAAGGG
CAAACGCGGC CATTGTGCTT TATGCCTCGC ACCGCCTTTG CCTATGTGGA AGCACCAGGT
AGTCATCAAG AAAAATTAAT CGCCGCGCAA AAACTGTGGC GAGATGAGCA AAATCAGCTA
GGGGAAGGTT TTGAGCCCCA TAACCACAGG CTGTTTCGCT TTCCTGATGA TTTCACCGAG
TCTGGCTTTG GCGCAATAGC CACCACATTA TTGAGCCCCA TGCTGAGCCT GTATCACAAG
GGCAAACTCA GTGAGTTAGA AGATTTTGTC AGTCAGGCAG CGGTGGGCCA TAGCGAGGTT
AACATGGGCG AAGTAGAAAA GAGCGCTGCA GAACAGATCC CAGTAAACCA GTTAGCAGTA
AACCAAAGCC CAGTAGACCA GAGCGCAGTA AACCAGAGCC CAGTAAACCA GAATGTTGGC
AGAACAGCGG ACGATGCCGT TACAAGCAAG GGGGAGCGCC ATGACTGA
|
|---|
| Protein sequence | MLTLIQSNQM EVLSEQLAKL LATPLDETNL LASEHVLVQS PGMSTWLRLE VARHNGIAAA
LEFPLPSSFI WQLCHTLLPD VPKDNAFTKP AMTWKLMDLL PRLLDDADFA PLANYLTTEL
ATELAPELAP ELATEIKPDQ AAAAPDSRSQ AIVLSAAQDA IKRYQLCSRI ADIFDQYLVY
RPEWILAWEQ NKPLTSLDNK LKLDDSQLWQ PKLWRALIDY NRDELGASPY HRANLHESLL
EALADEQSSV ANLPQRLFVF GISSMPPQTL EILHQLAGRI PVVMLALSPC EHYWGDIIDP
KTRARMALQY ADKKQLAQDW ESSLEVGNPL LANNGKLGRE LLDLMLALPS EHTDFGYDCY
VKPWDINLHS DDENDAVPVN TPQNAKLLHG VQYDILQMET LGVSLGPDAA LYNNIPNRRL
LQPDDDSITI RTCHSPLREV ETLHNHLLAM LSRCPQLHPK DIVVMMPDVA AYAPYIDAVF
GTANAEASGI DGARQQGNSY IPYAIADRGA AAESPLINSF LSLLNINQSR FALTEIMGIL
EVPAILRRFK LSGDELSQIR LWLDEANVRW GRDEHSRAAL NLPAFEQNSW AFGIRRLILG
YAFHDGAPLY QDTLLVPGLE GQSAQALGKL MNFLETLDDY RALFAAPCTT SSRLFELQTL
LQDIFEADDD EREEIQAINE AIAKLSEELN GAGHQGMLDI EVLKIWFNQR LSESRVGQRY
LAGSVNFCTL MPMRSIPFNM VCLLGMNDGD YPRVQHPVGF DLMAHFGAKK GDRSRRADDR
YLFLEALLSA REQLYISYIG QSERDNSERI PSMLVSELIE YCQLCYLTPE MKEQLSKLDE
EQILALSKPC DDALLARLIQ AQPLQPFDPK LFRDNQALGI ALQQSYHSQW CPPSTPANKT
TTAPASAAAS GSASAETSVN TWVMNSSGRF LGPNQSLPQS ILADSLWPQW HSDLEERAVF
AATDAELELS ALLRFFRNPS QFFFNRSLKV DLSLDIQADD NDEPFSLNAL ERYLLQAKLL
DKILAPDLDT SDLDNNGDDR KKTPEASLTQ ALKAAGSLPM APFDELLLSQ YQRDMAPLIG
RVQFMRGEQC EPRSLNLELE FSFSPGQILA NSLELSEISL EPALINSPEL AHNAAQAPLK
LTLLGRIDDI LPKGLINYRP GAAHGRDLVR VYLRHLCLNA SGQQQTSYLL DMAQFHSFAP
ITPAHATAQL KAFILAYIQG QTRPLCFMPR TAFAYVEAPG SHQEKLIAAQ KLWRDEQNQL
GEGFEPHNHR LFRFPDDFTE SGFGAIATTL LSPMLSLYHK GKLSELEDFV SQAAVGHSEV
NMGEVEKSAA EQIPVNQLAV NQSPVDQSAV NQSPVNQNVG RTADDAVTSK GERHD
|
|---|
| |