Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_2170 |
Symbol | |
ID | 4018662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 2570284 |
End bp | 2571270 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 637956194 |
Product | helix-turn-helix, AraC type |
Protein accession | YP_563175 |
Protein GI | 91793524 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACTTT ATTTTTCTAG CCCTTTAGTT ATTATTCATT CTGATAACAA TATTTTTGTT AACCTTATTG GCTGGGGGTA TTTTATTCCG GCTAGCTTTG GTGCATTTTT ATATTTATAT TGCCGTTCTG CCATCATTGA TAAACCTTTT CATCTTAGTG ATTTTTTACA TTGCACCCCT TTATTACTCT GTCTGTTCCT CAATCTTGAT TACTTATTAA CGCCACCATT GGAAAAAATT GATATTGTTA ATAGCGGTCA ACGGGATAGT AATATTGTCA TTTTAACTCA GCTATTAATG GTGTTGCAGG CATTTTTCTA TTTATGGTTA AGTGTTAAAT TAATTATTAA TTTTAAAAGG CGAGCGGACA ACTCTCTTTC AGGCTTTAAC CCAAACATAT TTACTTGGTT ATGGGTGTTA CTAGGCTTGT ACGGAGTCAT TTGGTTGTTA GAAATGTTAG GTCTTGTATT AGGTGGGAAT TATATTATAT CAGTAGTAAG TGATGTGTTG TTTCTCTTTT TAATTTACAG TATTTCGATG GCTCAATGGC GAGATCCAAA ATTATTTATC ATTGATGAGT TATTTTTAAT ATCCGTCAAT GCAAAAGATC AAAAGGCTAA AACGGTAGTA TTTGATAACT GTACTAGACA AAGTTTGCTC GATAATGTTG TTGGGTTTAT GAATGATAAA AAACCATACT TAGACAATAA TATTACGTTA GACACTTTGG CAAAATCTAT TGGCCTTAGT AGCCATCATT TGTCTGAAAT ACTGAATCAA CAGGCAAATA AAAACTTTTA TCAATTCATC AATGAATACA GAATTAACTT TATCTGTGAA AGTATTGTAG TTGACCCGAA TAGTAAAATT TTAGATTTAG CGATGGCAGG CGGTTTTTCC TCTAAAAGTA CTTTTAATGC TGTTTTTAAA CAAATGAAAG GCGTGACTCC TACTCAATAC CGTAATAACT TAAAATATAA CGATTAA
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Protein sequence | MALYFSSPLV IIHSDNNIFV NLIGWGYFIP ASFGAFLYLY CRSAIIDKPF HLSDFLHCTP LLLCLFLNLD YLLTPPLEKI DIVNSGQRDS NIVILTQLLM VLQAFFYLWL SVKLIINFKR RADNSLSGFN PNIFTWLWVL LGLYGVIWLL EMLGLVLGGN YIISVVSDVL FLFLIYSISM AQWRDPKLFI IDELFLISVN AKDQKAKTVV FDNCTRQSLL DNVVGFMNDK KPYLDNNITL DTLAKSIGLS SHHLSEILNQ QANKNFYQFI NEYRINFICE SIVVDPNSKI LDLAMAGGFS SKSTFNAVFK QMKGVTPTQY RNNLKYND
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