Gene Sden_2032 details

Gene Information

• Locus tag: Sden_2032
• ID: 4018524
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 2412749
• End bp: 2414710
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637956057
• Product: alpha amylase, catalytic region
• Protein accession: YP_563038
• Protein GI: 91793387
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.324011
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTAACA TCAATAATGC GATATCGACA ATTACAAACA CTTTACTGCT AAGCGGTCTC 
ATTTTTGCTG GGATAAGTCA GGCTAATGCC CAAGCCTCAT CACAAAAAGT CAGCGCTGCA 
CCTGCACCAG GCGTTTTGCC CCACAAGGCG GTGGTTTATC AGGTGTTTAC CCGCCTCTAT 
GGCAACAAGA AGACCGCCAA TATCCCCTGG GGCACAATCG ATGAAAATGG CGTGGGTAAA 
TTCAGTGACT TCAGTGAGCT TGCACTTAAA GACATACAAT CCCTAGGCGT CAGCCACATC 
TGGTTTACTG GGGTGCCGCA CCATGCGCTC ATCAATGATT ACTCCGCTAT TGGCATAAGT 
CATGACGACC CCGATGTGGT CAAGGGCCGC GCGGGATCAC CCTATGCGGT CAAAGACTAT 
TACAAGGTCA ATCCAGATCT TGCCGATAAC CCGGCACAAG GATTAGCCGA ATTTGAAGCC 
CTCATTGCCC GTACCCACAA ACTTGGAATG AAGGTCATCA TAGACATAGT GCCCAACCAT 
GTGGCGCGCA GCTATCAATC CCAATATAAA GGCGCTGAAA ATTTTGGCGC CAAGGACGAT 
ACGAGTCTTA CCTATGCCAG ACACAATAAT TTTTATTATG TCCAAGGCCA AGCGTTCAGC 
GTGCCCGATG TGACAAAAAA GCCCCTCGGC GGTGAGTCTC ATTCACTTTC TGATGGCAAG 
TTTGCAGAAA ACCCCGCTAA ATGGACAGGC AATGGCTCCC GCCTTGCTAA ACCCGATGAA 
AATGATTGGT ATGAAACAGT TAAAATCAAT TATGGCGTGC GCCCCGATGG CAGCCATGAC 
TTCCCTGCTC TCCCCCAACG TTTTAGGGAA AAAAGTACCG CCGAGCATCT CGCGTTCTGG 
CAGTCGCAAG ACAGCAATGA TATTCCCGAT TCCTGGAAAA AATTTACTCA TATCGCCCAA 
TACTGGCTCG ATAAAGGCGT CGATGGCTTT CGCTATGATA TGGCCGAAAT GGTGCCGGTT 
GAATTTTGGA GTTATTTAAA TAGCCACATC AAACACATCA AGCCAGAGGC TTTCTTACTG 
GCAGAAGTCT ATAACCCCAG TCTTTATGAA GATTACATTC AACTTGGGAA AATGGATTAC 
TTGTACGATA AAGTCGGCCT TTACGACACA TTAAAAGCCG TTATTCGCGG TCACAAAAAT 
ACAGATGAAA TTGCTAAGGT GCAGGCCCAG GTGGCGCCTT TTGCCGATCA CATGCTGCAT 
TTCTTAGAAA ACCATGATGA GCAGCGTATT CCGAGTTTTG ATTTTGCCGG CAGCCCAGAA 
GCCGCCCTGC CCGCCATGGT GGTATCAACC ACATTAAGCC GCTCACCCAC CTTAGTGTAT 
TTCGGTCAAG AAGTGGGCGA ACAAGGCAAT GAAGTGGCAG GCTTTGGCGC ACCCACACGT 
ACCAGTATTT TCGATTATGT TGGCGTGCCC GCCCATCAAA GATGGATGAA TGGGGGTAAA 
TTTGATGGTG GACAATCTAG CGAGCAAGAA AAACAACTGC GAGCCTATTA CCAAACCCTA 
CTGAACCTAA GCCGTAAAGC GCCTGCACTC AAAGGGAATT ATCACCCCCT TAACAGTCAT 
GATGACAAGG TGTTCGCCTT TAGCCGATCC AATGCTGCGC AGCGACTTAT TATCGTCAGT 
AACTTCGATA GCAAACAGGG TAGAAAACTC TCCATAGCAC TGCCCAAAAA CCTAGTCGAC 
GCATGGCAAG CACCTATGGC CACTAAGCTT CAGGATAGTC AGAAGCGAGA TAGTCAGGCG 
CGGGATAAAC TAAAGGCGAC ACAGATAAGG CTTAAGGACC TCCTCAACCC AAACCCTAGG 
CAAGAGTATC AGTTGCGTGT CAAGAATGAG AATGGAGTGG TACTGAGCGC CAGCCTCAAC 
TTAACCCTCG CACCACTGGA GTCCGTCATC TTGGCTTGGT AA 

 

Protein sequence

MININNAIST ITNTLLLSGL IFAGISQANA QASSQKVSAA PAPGVLPHKA VVYQVFTRLY 
GNKKTANIPW GTIDENGVGK FSDFSELALK DIQSLGVSHI WFTGVPHHAL INDYSAIGIS 
HDDPDVVKGR AGSPYAVKDY YKVNPDLADN PAQGLAEFEA LIARTHKLGM KVIIDIVPNH 
VARSYQSQYK GAENFGAKDD TSLTYARHNN FYYVQGQAFS VPDVTKKPLG GESHSLSDGK 
FAENPAKWTG NGSRLAKPDE NDWYETVKIN YGVRPDGSHD FPALPQRFRE KSTAEHLAFW 
QSQDSNDIPD SWKKFTHIAQ YWLDKGVDGF RYDMAEMVPV EFWSYLNSHI KHIKPEAFLL 
AEVYNPSLYE DYIQLGKMDY LYDKVGLYDT LKAVIRGHKN TDEIAKVQAQ VAPFADHMLH 
FLENHDEQRI PSFDFAGSPE AALPAMVVST TLSRSPTLVY FGQEVGEQGN EVAGFGAPTR 
TSIFDYVGVP AHQRWMNGGK FDGGQSSEQE KQLRAYYQTL LNLSRKAPAL KGNYHPLNSH 
DDKVFAFSRS NAAQRLIIVS NFDSKQGRKL SIALPKNLVD AWQAPMATKL QDSQKRDSQA 
RDKLKATQIR LKDLLNPNPR QEYQLRVKNE NGVVLSASLN LTLAPLESVI LAW