Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_2031 |
Symbol | |
ID | 4018523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 2410787 |
End bp | 2412712 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637956056 |
Product | alpha amylase, catalytic region |
Protein accession | YP_563037 |
Protein GI | 91793386 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAAAT TGACCTTCAC TGTGGCTACC ACCCTGCTTA TGAGTGCGAT GAATTTAGCT ATTGCAGCGC AAAGCCCCTC CTCCTTTACC ATCAATGCTG AGCCTATGTT TTGGTGGGCG GGAATGGAAA ATAGTCAACT AGAGCTCTTG ATAGAAGGCG ACAATGTTGC GGCCTTGACC CCTAAGCTTA GCCAACAGCA AGGCATTACA TTAGTCAAGA CTGAGCGCAG CACTAGCCCA AACCATTTGT TTGTTACTCT GGATCTGCAT CAAGCCCAGC CGCAAACATT AACCATTGAT TTTTATGAAT TAAACAATCC TAAAAAACCC GCTACAGCGA CATTAGCCTA TCAACTAAAA CCAAGAACAT CAGACTCAAA GCAGCGCCAA GGCTTTAGCA ATAAAGACGT GATATACCTT ATTACCCCAG ACAGATTCGC CAATGGCAAC CCAGATAACG ATAACCATAC CACCATGTTG GAAAAGGTGA ACCGCAGCGA TAAAGATGGC CGTCATGGCG GCGACATCCA GGGCATAATC GAGGCGCTGC CTTATTTAGC CGACTTAGGT GTGACTCAGC TATGGATAAA CCCACTACTG GAAAATAACC AAGAAAAGTA TTCTTACCAT GGTTATTCCA TCACAAACTT TTATCGAATA GACCCCCGCT TTGGCAGCAA TCAGGACTAT GTCAATCTAG TTCAACAGGC GAATAAATTG GGGATTGGGG TAATTAAAGA CATAGTTGTC AATCATATGG GCAGCGGTCA TCCTTGGATG ACAAATTTCC CCAGCGCCAC CTGGGTCAAC GGCCAAGCAA GTTTGCAGCA ACAACTGCCA TTGGATTTTA CCAACCATAG ACGCACCACA GTGCAAGACC CCTATGCCGC GAGCACCGAC ACCCAAGCCT TCAGCGACGG CTGGTTTACC GATACCATGC CTGACATGAA CCAGACCGAC CCTCACTTTG CCACCTATCT CATTCAGAAC AGCATCTGGT GGGTGGAGTA CGCAGGTTTG AGCGGCATTC GAGAAGACAC TTACTCTTAT GCTGATAAAG CTTTCTTAAC TCAGTGGTCT AAGGCCATCA TGACCGAATA CCCCAAGTTC AATATTGTCG GTGAAGAGTG GAGTCCTAAC CCCATCACCG TCAGCTATTG GCAGGCGGGC AAGCATAATA AAGATGGCTA TGTCTCCCAT GTACCTAGCA TGATGGACTT CCCCTTGTAT GAGAAACTTA TCGCCTCGCT CACCCAAGTC GAAGGCTGGG ACACGGGCCT AGTCAACCTC TATGAGATGC TCGCCAACGA TGTGGTTTAT GCCGAACCGA CCCAATTGGT GCTGTTTGAA GGCAATCACG ACACCAATCG CCTCTATAGC TTGATGAATG AAGATCTTGC CCTGTTTAAG ATGGCCATGG CTTATGTGCT CACGAGTAAT CGCATTCCAC AGATTTTTTA TGGCACAGAA GTGTTGATGA CAAGCCCCAC TAAAGACAGA AACGATGGCC TAGTTCGCAG TGATTTTCCC GGTGGTTGGC AAGGCGATAG CCAAAATGCC ATCACAGGCG ATAACCTCAG TCCAGCTCAA ATCGAAGCTC AACATTTTAT CAAGACCTTG CTCAATTACC GTAAGCACTC AGACGCTATC ATAAACGGCA CCCTTAGCCA TTACGCCCCT CAAGACGGTG TGTATGTGCA ATTCAGACAA GCTGGGGATG AAACCTTGAT GAGTATCTAC AACAAAAATT CGGCCCCAGT GAATTTAGCC TTAGGCCGTT TTGCCGAGCA TATAGGCAAG CACACTCAAG CCAGCAACAT CCTTGAACAC ACAGAGTTTG ACTTAAATGA CAGCATATCG CTCACAAAAA AAGGCGTGAC TCTGCTCAAA TTAAGTACGC TCAAATTAAG TACCCACAAG CCCTAG
|
Protein sequence | MKKLTFTVAT TLLMSAMNLA IAAQSPSSFT INAEPMFWWA GMENSQLELL IEGDNVAALT PKLSQQQGIT LVKTERSTSP NHLFVTLDLH QAQPQTLTID FYELNNPKKP ATATLAYQLK PRTSDSKQRQ GFSNKDVIYL ITPDRFANGN PDNDNHTTML EKVNRSDKDG RHGGDIQGII EALPYLADLG VTQLWINPLL ENNQEKYSYH GYSITNFYRI DPRFGSNQDY VNLVQQANKL GIGVIKDIVV NHMGSGHPWM TNFPSATWVN GQASLQQQLP LDFTNHRRTT VQDPYAASTD TQAFSDGWFT DTMPDMNQTD PHFATYLIQN SIWWVEYAGL SGIREDTYSY ADKAFLTQWS KAIMTEYPKF NIVGEEWSPN PITVSYWQAG KHNKDGYVSH VPSMMDFPLY EKLIASLTQV EGWDTGLVNL YEMLANDVVY AEPTQLVLFE GNHDTNRLYS LMNEDLALFK MAMAYVLTSN RIPQIFYGTE VLMTSPTKDR NDGLVRSDFP GGWQGDSQNA ITGDNLSPAQ IEAQHFIKTL LNYRKHSDAI INGTLSHYAP QDGVYVQFRQ AGDETLMSIY NKNSAPVNLA LGRFAEHIGK HTQASNILEH TEFDLNDSIS LTKKGVTLLK LSTLKLSTHK P
|
| |