| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1950 |
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| Symbol | |
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| ID | 4018439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2310510 |
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| End bp | 2311196 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637955972 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_562956 |
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| Protein GI | 91793305 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0253028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGATAT CTCAACACCC AGTGCCTGGC ACAGAGATTC AGGCGGTACT GTTTGATTTA
GACGGCACCT TAGTCGATAC GGCGCCAGAC TTGATTGAAG CGCTCAATCT CAGCCTAGAA
ACTGCAGGCT TCGAGCGCCA ACAGCCTGAG TTTATCCGCC CTTTTGCTTC CCATGGCAGC
ATGGCCATGG TCAACGCGGC CATCGCCTTT GCCAGCGAAG AGGTTAAGGC CCAGGTACGT
CAAGGCCTAC TTGAACATTA TCAAGTCATT AATGGTCAGC AGAGTCAGCT ATTTGATGGT
ATCGCACCAT TATTAGCGCA GCTTAAAGCG CTCGGGCTTC CCATCGGGGT CGTGACTAAT
AAACCGGCCC GTTTCGCGAG GCCACTTATT GATGTCTTAG GCTTAAATGC ACAGCTTGGC
ACTATCATCA GTGGTGACAG CACCCTTTAT TCTAAGCCTC ATACCGCCCC CATGTTACTG
GCAGCGCAGC AAATTGCAGT GGCGCCAGCA CACATCTTGT ATTTAGGGGA TGCACTGCGG
GACCTTCAAG CGGCTCACAA TGCCAATATG CAAGGCGGTA TTGCCCTGTG GGGGTATTTA
GCCCGTGATG ATGAGCCCGC CTCTTGGCCG TCTCGATACC AATTTAATAG CGCGTTTGAG
GTCACGGACT TGTTTTCTTT GAAATGA
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| Protein sequence | MSISQHPVPG TEIQAVLFDL DGTLVDTAPD LIEALNLSLE TAGFERQQPE FIRPFASHGS
MAMVNAAIAF ASEEVKAQVR QGLLEHYQVI NGQQSQLFDG IAPLLAQLKA LGLPIGVVTN
KPARFARPLI DVLGLNAQLG TIISGDSTLY SKPHTAPMLL AAQQIAVAPA HILYLGDALR
DLQAAHNANM QGGIALWGYL ARDDEPASWP SRYQFNSAFE VTDLFSLK
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