Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1771 |
Symbol | |
ID | 4018250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 2094296 |
End bp | 2096137 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637955784 |
Product | thiamine-phosphate pyrophosphorylase |
Protein accession | YP_562778 |
Protein GI | 91793127 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [COG0352] Thiamine monophosphate synthase |
TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase [TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACAC CTCCAACAAT TGTCTGGACC ATAGCGGGCT CCGATAGCGG CGGTGGGGCG GGAATACAGG CTGATTTGGC AACGGCGCAG GACTTGGGGT GTCACTGCGC TACCGTTATC ACCACAGTGA CGGCACAAAA CTCTGTCTGC GTGAGTTTGG TTGAAGGCGT ATCAGCTGCC ATGTTGTTAG CTCAACTTAA TAGTCTCGCC CGTGATTTAC CGCCGGCAGC GATTAAAATT GGTTTATTGG CATCACAGCA GCAAGTCGAT GTGGTCGCTA ACTGGTTGAA GCGTTTGACT CAGCAACGCC GGTCTAAGGG TCAACTTGCG GTGATTTTAG ATCCCGTGAT GGTCGCCAGC AGTGGCGATA GGCTTAACCT AAATCCAAGT ATAAGTCCTT CTATAAGCTC TGGTATGAGC TCTAGTATGA GTTCAGGTAC TGGCTCTGGT TTTAACTCAG GTTCAGGCTT AGATTTTAGC GCCTTTATTG GGGTCGTTAG TTTAATCACT CCCAATCAAC AGGAACTGCA GTATCTAGTG TCAGGCCTGC AACTCAGCAA GACTGATAAT AGCCATAATC GTCACAGTCA AGGGATCGGC ACTTCAATCG AGAGTCAGGC AGATTTTATT GCTAAAACAG AAATGCTGGC TAACGCCTTT GGCTGTCATG TCTTAGCTAA AGGCGGGGAT GGCAAGCACT GGCAAGGCGA TGCAGCCATA GATTGTTATG TGTGTCATCA CGTTGAAGGC GCGAGCCTTC ATCATGATAA CGCCACTTAT TTACTATCAA GCTGCAGAGT GAATACGGGC AACAATCACG GCACGGGTTG CACACTATCA ATGGCCATCG CAAGTTTTAT GGCACAGGAC TTTGTACTCC ATGATGCCAT AGTGCTCGCT AAAGCCTATG TGACTCAAGG TTTGATCGAA AGCTATCAGC CAGGTTCAGG CCCTGGCACA CTGGCAAGAA CAGGCTGGCC TGATGACTTG GCTTTATTTC CTCAGATCTG GCCCGTGAAT GACGCTGACA TTAACGGTTC AATGAAGGCC AATTCTGACT CAATTGAACC TCCGCTGCCA AATTTAGGAC AATGTATAAG CTTACATTCA AAGGGATTTA AGCCAATAGA AAAAGATCTT GGGATCTACC CTGTGGTCGA TAGCTTAGCA CTACTTAAGA CTCTGCTTAA GGCCGGTTGC CGCACCATTC AGCTCAGGCT CAAAATTGAT AGCAAAGAAG CATTTGGGCT AAAAAAGCAG CAGTTAGAAC AGAAAATTAT CGATGCCATC GAGCTTGGAC GAACCTTTAA TGCGCAGGTG TTTATTAATG ATCACTGGCA GTTGGCACTG AGGCACAAAG CTTTTGGGCT GCACTTAGGG CAAGAAGACT TGTTCGAGGT GGACCTTAAG GCAATCAAAG CTGCAGGCAT GGCCCTTGGG CTATCGAGTC ACAGTTATTT TGAAATCCTG CTTTCCCACC AACTTAGGCC TTCATATATC GCCCTTGGGC ATATTTTTCC TACACCTACC AAAACCATGG CATCTAAACC TCAGGGACTT AAGAAGCTTA AGCATTATGC AAAGCTATTA AATAAGCATT ACCCCACAGT GGCCATTGGC GGTATAGATG AGACACGTCT AAAGGAGATA AAAGCCACTG GCGTGGCGAA TGTCGCAGTA GTGCGGGCAT TGACTAATGC AACAGATCCT ACGCTTGCTT TTGATAATCT AACTCGCCTC TGGAATGGCA ATAAGGCCGA GCAATATAAC GCTAAGCTTG AACTTGAGCA TAAAAAGGGG CACATGCAGG CTTCAGTGAC TGAGGTGAGT TATGCACCCT AA
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Protein sequence | MNTPPTIVWT IAGSDSGGGA GIQADLATAQ DLGCHCATVI TTVTAQNSVC VSLVEGVSAA MLLAQLNSLA RDLPPAAIKI GLLASQQQVD VVANWLKRLT QQRRSKGQLA VILDPVMVAS SGDRLNLNPS ISPSISSGMS SSMSSGTGSG FNSGSGLDFS AFIGVVSLIT PNQQELQYLV SGLQLSKTDN SHNRHSQGIG TSIESQADFI AKTEMLANAF GCHVLAKGGD GKHWQGDAAI DCYVCHHVEG ASLHHDNATY LLSSCRVNTG NNHGTGCTLS MAIASFMAQD FVLHDAIVLA KAYVTQGLIE SYQPGSGPGT LARTGWPDDL ALFPQIWPVN DADINGSMKA NSDSIEPPLP NLGQCISLHS KGFKPIEKDL GIYPVVDSLA LLKTLLKAGC RTIQLRLKID SKEAFGLKKQ QLEQKIIDAI ELGRTFNAQV FINDHWQLAL RHKAFGLHLG QEDLFEVDLK AIKAAGMALG LSSHSYFEIL LSHQLRPSYI ALGHIFPTPT KTMASKPQGL KKLKHYAKLL NKHYPTVAIG GIDETRLKEI KATGVANVAV VRALTNATDP TLAFDNLTRL WNGNKAEQYN AKLELEHKKG HMQASVTEVS YAP
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