| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1664 |
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| Symbol | prpB |
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| ID | 4018140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1932544 |
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| End bp | 1933422 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637955675 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_562671 |
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| Protein GI | 91793020 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCAG GTAAGAAATT CCGTCAGGCA TTAGCCGACA ATAAGCCACT GCAAATTTTA
GGCACCATCA ATGCGTATAG CGCCATTATG GCCAAAAAAA TTGGTCATAA GGCCATTTAC
TTAAGTGGTG GCGGCGTGGC TAACGCTTCA TATGGCTTGC CAGATCTTGG CATGACGTCC
CTTAACGATG TGTTAGTGGA TGTGCAGCGC ATTACTGCCG CCTGTGATTT ACCCTTGCTG
GTGGATATAG ACACTGGTTG GGGCGGGGCG TTTAATATCG CTAAAACCGT GCGTGACATG
GAAAAAGCCG GCGCAGCAGC CGTGCACATG GAAGATCAAG TGGCGCAAAA GCGTTGTGGC
CACAGACCCA ACAAAGAGAT CGTCACAGTG GAAGAAATGG TTGACCGCAT TAAGGCGGCT
GTGGATGCAC GCACAGATCC TGATTTTTTC ATCATGGCGC GCACCGATTC GTTCGCCCAA
GAAGGATTGG AGGCTGCCAT TGCCCGTGCT AAAGCCTATG TGGCAGCTGG CGCCGACGGT
ATTTTTGCCG AAGCCATAAA AACTGAAGCT CATTATCGCG CCTTTGCTGA AGCCTTAGAT
GTGCCCATTC TTGCTAACAT TACCGAGTTT GGCCAGACTG AACTGTGGAA CAAAAAAGAG
TTGGGCGAAT GGGGCGTGAG CATGGTGCTT TACCCTTTGA GCGCATTTCG TGCCATGAAC
AAGGCGGCAG AAATGGTGTA TCAGTCTATT CTTGAGCAGG GCGATCAAAA AGCCGTGGTC
GACAGCATGC AGACCCGCAT GGACTTGTAC GATTATTTGG GCTATCACGA GTACGAGCAA
AAGTTAGACA GCTTGTTTGC CGAAGGCAAA AATAAGTAA
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| Protein sequence | MSAGKKFRQA LADNKPLQIL GTINAYSAIM AKKIGHKAIY LSGGGVANAS YGLPDLGMTS
LNDVLVDVQR ITAACDLPLL VDIDTGWGGA FNIAKTVRDM EKAGAAAVHM EDQVAQKRCG
HRPNKEIVTV EEMVDRIKAA VDARTDPDFF IMARTDSFAQ EGLEAAIARA KAYVAAGADG
IFAEAIKTEA HYRAFAEALD VPILANITEF GQTELWNKKE LGEWGVSMVL YPLSAFRAMN
KAAEMVYQSI LEQGDQKAVV DSMQTRMDLY DYLGYHEYEQ KLDSLFAEGK NK
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