| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1625 |
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| Symbol | |
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| ID | 4018100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1888857 |
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| End bp | 1890530 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637955635 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_562632 |
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| Protein GI | 91792981 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000265085 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTAAGC CTTGGATTAA TAACTTGCCA GCAGAGGTTC CAGCGGAAAT TGACCCTGAG
CAATTTTCGT CATTAGTAAC CATGTTCGAA GCCGCAGTGG CTAAATACGC CGATCAGCCT
GCGTTTATCA ATATGGGTGC GACTATCACC TACCGCAAAC TTGAAGAGCG CAGCCGCGCT
TTTGCCGCTT ATTTGCAAAA TGAATTAAAG TTAGAGAAGG GCGATCGCGT CGCCTTGATG
ATGCCTAATT TATTGCAATA CCCCATCGCC TTGTTTGGCG TGCTTCGCGC TGGCATGGTG
GTGGTGAACG TTAACCCCTT GTATACCCCG AGAGAGTTAA AACACCAGCT GGTGGACTCA
GGCGCTAAAG CCATAGTGGT GGTATCAAAC TTTGCTAAGA CCTTGGAAGA AGTGGTTAAT
GAAACCCCGG TCGAGTCTGT GATCGTTACT CGTCTAGGGG ATCAGCTCAG CGCGCCAAAA
CGCACTTTAG TGAACTTTGT GGTTAAATAC ATCAAGAAGT TAGTGCCTAA GTATGATTTA
CCCCATGCAC TGTCTTTTAG AGATTCATTA ACTCAAGGCC GCAGACTGCA ATACATCAAG
CCTGAGATAA ATAGTGAAGA CTTGGCCTTT TTGCAGTACA CAGGCGGGAC GACTGGGGTG
TCTAAAGGCG CCATGCTGAC GCACAAAAAT GTGGTGAGCA ATGTGCTGCA AGCCAATGGG
GCTTATTCGC CTGCATTGAA CGATGGCACA GAATTCGTTG TTACAGCATT GCCCTTGTAT
CATATCTTTG CGCTAACAGT TAACTGTTTG TTATTTATGC ATAAAGGTAG CCAGAATCTA
TTAATTACCA ACCCAAGAGA CATTCCGGCA TTCGTGGGCG AGTTAAAGAA ATACCCCTTT
ACCGCGTTAA CTGGGGTGAA CACCTTATTT AATGCGCTGG TGAATAACAC AGACTTTACC
AGTTTAGATT TTTCACGGCT TAAGCTGTCA ATTGGCGGCG GCATGGCGGT ACAAAAAGCG
GTTGCCGATA AATGGCAATC GATCACCAAA ACCCGTTTAT TGGAAGGTTA TGGTCTAACT
GAAGCCTCTC CCTTGCTGAC ATGCTGTCCG TATAACTTAA GCGGATACAA CGGCTCTATT
GGTTTCCCTG CGCCTTCGAC CTTAATTCAA ATTCGTGATG AAGACGGTAA TGCATTGGCT
CAAGGCGAGC GCGGCGAGCT GTTTGCAAAA GGCCCTCAGG TGATGCAAGG TTATTGGCAG
CGCCCTGAAG AAACCGCTAA AGTCATAGAC AGCGATGGCT GGTTATCTAC GGGTGACATA
GGTTACATGG ATGAAAAAGG CTTCTTTTAT ATTGTCGATC GTAAAAAAGA CATGATCTTA
GTCTCAGGCT TTAATGTGTT CCCCAATGAA GTGGAAGATG TGGTTGCCTT ACACCCTAAG
GTAATTGAAG TGGCCGCAGT CGGTGTGCCC AATGATGCTA GCGGCGAATT AGTGAAGATT
TTTGTGGTGG CTAAAGATAA GTCATTAACA GAAGATGAGT TAATTAAGCA TTGCCGTCAC
CATTTAACGG GCTATAAGGT ACCTAAACTG GTAGAATTCA GAGACGAATT ACCAAAAACC
AATGTGGGTA AAATTTTACG CCGTCAGCTC AGAGATGAAG CGAAAACAGC ATAA
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| Protein sequence | MIKPWINNLP AEVPAEIDPE QFSSLVTMFE AAVAKYADQP AFINMGATIT YRKLEERSRA
FAAYLQNELK LEKGDRVALM MPNLLQYPIA LFGVLRAGMV VVNVNPLYTP RELKHQLVDS
GAKAIVVVSN FAKTLEEVVN ETPVESVIVT RLGDQLSAPK RTLVNFVVKY IKKLVPKYDL
PHALSFRDSL TQGRRLQYIK PEINSEDLAF LQYTGGTTGV SKGAMLTHKN VVSNVLQANG
AYSPALNDGT EFVVTALPLY HIFALTVNCL LFMHKGSQNL LITNPRDIPA FVGELKKYPF
TALTGVNTLF NALVNNTDFT SLDFSRLKLS IGGGMAVQKA VADKWQSITK TRLLEGYGLT
EASPLLTCCP YNLSGYNGSI GFPAPSTLIQ IRDEDGNALA QGERGELFAK GPQVMQGYWQ
RPEETAKVID SDGWLSTGDI GYMDEKGFFY IVDRKKDMIL VSGFNVFPNE VEDVVALHPK
VIEVAAVGVP NDASGELVKI FVVAKDKSLT EDELIKHCRH HLTGYKVPKL VEFRDELPKT
NVGKILRRQL RDEAKTA
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