Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1551 |
Symbol | dapD |
ID | 4018024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 1803218 |
End bp | 1804042 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637955561 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_562559 |
Protein GI | 91792908 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGGCAT TACGCCAACG TATTGAAACT GCATTTGAAA ATCGTCAACA CATCACACCA GGCACAGTTG AACCTAGCCT GCGTGCCGAT GTTGAAACGG TTATTGCCAT GTTAGACAAA GGTGAGGCTC GAGTCGCTGA AAAAATTAAC GGCCAGTGGC AGGTACACCA ATGGTTAAAA AAAGCGGTAT TACTGTCTTT TCGGATATTT GATAACGGCG TCATTGATGG TGGTGACACT AAATATTTCG ATAAAGTACC GCAAAAATTT GCGGACTACG ATGAAGCCCG CTTTAAAGCC GAAGCCATTC GCGTTGTTCC ACCTGCCACT GTGCGCAAAG GCTCCTTTAT CGGTAAAAAC ACTGTGCTTA TGCCCTCTTA CGTAAATTTA GGTGCCTATG TAGATGAAGG CACTATGGTT GATACATGGG CGACAGTGGG TTCATGTGCA CAAATTGGCA AGAACGTGCA CTTGTCTGGC GGTGTGGGTA TTGGCGGTGT ACTTGAACCC TTACAGGCTG GCCCAACAAT TATCGAAGAC AATTGCTTTA TCGGCGCTCG CAGTGAAATC GTTGAGGGCG TAGTGGTTGA AGAAGGCAGC GTGATTTCTA TGGGGGTCTA TATAGGCCAA AGCACCCGTA TTTTTGATCG TGAAACCGGC GAAGTGCATT ATGGCCGTGT GCCTGCAGGC TCAGTCGTAG TATCGGGCAA CTTACCCTCA GCCTGTGGCA AATACAGCTT GTATGCCGCC ATCATAGTCA AAAAAGTTGA CGCTAAGACA CGTGCTAAAG TCGGTATTAA CGAACTTTTA CGAATCGTAG ATTAA
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Protein sequence | MEALRQRIET AFENRQHITP GTVEPSLRAD VETVIAMLDK GEARVAEKIN GQWQVHQWLK KAVLLSFRIF DNGVIDGGDT KYFDKVPQKF ADYDEARFKA EAIRVVPPAT VRKGSFIGKN TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIFDRETG EVHYGRVPAG SVVVSGNLPS ACGKYSLYAA IIVKKVDAKT RAKVGINELL RIVD
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