| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1548 |
|---|
| Symbol | |
|---|
| ID | 4018021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1800015 |
|---|
| End bp | 1801463 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637955558 |
|---|
| Product | PTS system, glucose-like IIB component |
|---|
| Protein accession | YP_562556 |
|---|
| Protein GI | 91792905 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCACAGC CAAGTCGAAC ATTAAGCTAT TTAAATCAGC AATGGTTTAA GTTTGCCCAG
CGCTTGAGCC AAGCGCTGTT GGTGCCCATT GCTATTCTGC CTGCGGCAGG GCTCATGCTC
GGATTAACCG TAAACCCTCT ACCTTTTATC CCCATTGAAT TGACGATGAT TTTTGCCTCA
GTGGGCAAAT TGATTTTCAC CATGATGCCA CTGCTCTTTA GTGTTGCCAT CGCCATAGGT
TTTTGCAAAG ACCAAGGCAT AGCGGCATTT TCGGCGGTAT TTGGCTTTGG GGTATTTCAA
TCAACGTTAG GCGCTCTTAC CGCACTATAT CAGCTGCCTT CGAGGCCATT ATGGGGGATA
GATACCATAG ATACTGGTAT TGCAGGCGGT ATTTTAGTGG GGGCAGTGAC GTGTTTAGCG
GTCAGGCTAA GTCAGCATTT ACGCTTACCG GCGATTTTTT CGTTTTTCGA GGGTAGGCGC
AGTGCCCCCT TAATTGTCAT CCCCTTGACC ATAGGCCTTG CTTACTTATT AAGTCTATTG
TGGCCGAGTT TATCTGTGGT TATTCAACGC CTGTCTGATT GGGCTGTGTA TCAAGACCCA
TCCTTGGCTT TTGGCATTTA TGGCATGGTC GAGCGGCTGC TTATTCCCTT AGGCCTGCAC
CATATCTGGA ATGCGCCTTT TTATTTAGAA GTGGGTCAGT TTTTTGATGG TACTCATGTT
ATTCGAGGTG AAATCGGTCG TTATTTAGCG GGGGACATTA CCGCTGGAAA CCTTGCTGGT
GGCTATTTAA TCAAGATGTG GGGCTTACCC GCGGCGGCGC TGGCTATCTG GCGCTGCGCC
GATAAGAGTG AACGTAATCG TGTGGCTGGC ATTATGCTCT CTGCCGGCAT GGCGAGTTGG
CTAACCGGGG TAACTGAGCC GCTAGAGTTT GCCTTCTTGT TTGTCGCTCC TATATTGTTT
ATTTGTCATG CCATTTTAAC TGGGCTGGCT TACAGCCTCT GTGTGGTATT GGATATTCAC
CATGGGATAG TGTTTTCCCA CGGATTAGTG GATTTCAGCT TACTGTATTC TCTTTCATCC
AATACCGGTT GGCTGTTGAT TTTAGGGCCG TTAACTGGCG TCATCTACTA TGCGCTGTTT
ACTGTCAGTA TTTTAAGCTT TAATTTAAAA ACGCCCGGTC GCTTGGCTAG CGGCAATGAT
GAGCAAAAGG AAAGCCTACG CTCCATGATA GCCGCCTTAG GTGGAAGACA TAATGTGCTT
GAGTTGAATG CATGTTTAAC CCGTCTTAGG ATCAGCGTTA TCGACGCCAG TTTAGTGGAT
AAGGCCCGTT TGATGCGCCT TGGGGCCAAG GGCGTTATCG TTGTGGGTAA GGGGGTTCAA
GTGGTTTTCG GTACAAAAGC GGAAACATTA CGCAAATTAC TGCAAAAATA CTTAGATTCA
CGGCGTTAA
|
|---|
| Protein sequence | MAQPSRTLSY LNQQWFKFAQ RLSQALLVPI AILPAAGLML GLTVNPLPFI PIELTMIFAS
VGKLIFTMMP LLFSVAIAIG FCKDQGIAAF SAVFGFGVFQ STLGALTALY QLPSRPLWGI
DTIDTGIAGG ILVGAVTCLA VRLSQHLRLP AIFSFFEGRR SAPLIVIPLT IGLAYLLSLL
WPSLSVVIQR LSDWAVYQDP SLAFGIYGMV ERLLIPLGLH HIWNAPFYLE VGQFFDGTHV
IRGEIGRYLA GDITAGNLAG GYLIKMWGLP AAALAIWRCA DKSERNRVAG IMLSAGMASW
LTGVTEPLEF AFLFVAPILF ICHAILTGLA YSLCVVLDIH HGIVFSHGLV DFSLLYSLSS
NTGWLLILGP LTGVIYYALF TVSILSFNLK TPGRLASGND EQKESLRSMI AALGGRHNVL
ELNACLTRLR ISVIDASLVD KARLMRLGAK GVIVVGKGVQ VVFGTKAETL RKLLQKYLDS
RR
|
|---|
| |