| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1501 |
|---|
| Symbol | |
|---|
| ID | 4017270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1739692 |
|---|
| End bp | 1741188 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637955511 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_562509 |
|---|
| Protein GI | 91792858 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATC TTGTTGCATT CATGCTCGCC TTGAGCTGTT GTTCGACCTT AGTGCTCACG
ACTGAAGTGA GTGCTGATGA AGTGAGCCCT TTAGAGGTAA ACGTTTCAGA GGTGCTCGCC
AACGACAGGT TAATAGACGT TACAGATGAT ACAGCTCAAG CCTTGAGTCC GGCCCAGACG
CCTGACAGTG ACTTATTGGA TCATTTACGC CTGATTGCCC TTGCCGAGCC TAGTGCTCAA
CGTCATCAAT GGCTTCATAT TTTGCATCAG GGGAGCGCGG CTCAGCGGCT CGAATCTAGT
GATAACATTT ATCAGGATAT TGTCAATTTT TGGCAGCAGC GCCAAGTACC TATGAGGGGC
GGGGTTGAAC CGCTGGCAAG GGATGAGTTT AATCCGCTAT CTGACAGGCA AAAAAGCTTG
GCTATAGAGC CTAAATCCAA CATGTATCTG GCGGTCATGA ATCATGTGCG GCGTATGCTG
TGGTTGGATG AAAATGCCGA CTGGCCAGTG ATAGACCCAC AAGGTTTACT GCGCAGGAAT
GATGGTCATG CCAGCATTCC TGCTATAGCG GCCAGATTAA GCTTATTGGG CGACTTTCAT
GGTGCACATC AAGGATATGT ACTTACTCCT GCCTTAGAGA GCGGACTTAA GGCATTTCAG
CGCCGTCATG GTCTAAAAGA TGATGGTGTT ATTGGGCCAA AGACCTTGTC TTGGCTAAAT
CAGCTGCCCA TAGAAAGGGC CAGGCTGTTG GCGGTCAATT TTGTCGAACA AAGTCGTTAT
CAGGCGCAGC TCGATGACAG CTATCTGTTA GTGAATATCC CCGCTTTTGA AATGGTACTG
GTGGATAAAG GTCAAATTGT GCTGCACTCA CGGGTGATAG TGGGAAAAAG CTATCGTCAA
ACCCCGATAA TGTCTGGGGC GATTTCTAAT CTGGTGATAA ATCCAACTTG GACAGTACCC
CGTAGGTTGT TGCGCCAAGA TGTGCTGCCC CATGTCAGAA AAGACGGTCG TTATTTAGCG
GAAAAACAGT TCGATGTATT TAATTATCAA GGCCAAAAAC AACTGCTCAC TGCTGAGGAA
TGGCAATCCT TGGCTTACAC CCGCTTTCCT TACAAGTTAG TTCAGCGCCC TGGTGAGCAT
AATTCCTTAG GGCGTTATAA ATTTCATTTT AATAACGATA AAAATATCTA TCTGCACGAC
ACCCCTACGC CTGAGTTGTT TGCCAACGCG GAGCGGGCGC TGTCTTCAGG TTGTATTCGT
ATCGAAAAAG TTGCAGAGCT GGCTAACTGG TTTGCGGTCC ACAGAGTTAA TGACAAGCGG
ACCTGGCGCA GATTACAGAG CAGTAAACAC AAAACTCAAT GGTTTTCTTT AACTCATAGT
TTGCCGGTTC ATCTGGTCTA TTGGACCGCT TGGGTGGATG AGCATCATCT AGCGCAATAT
CGTAGCGATA TTTATCATAG AGGCGTACAA GTGCCAATCG ATCTGGTAAA AAATTGA
|
|---|
| Protein sequence | MRNLVAFMLA LSCCSTLVLT TEVSADEVSP LEVNVSEVLA NDRLIDVTDD TAQALSPAQT
PDSDLLDHLR LIALAEPSAQ RHQWLHILHQ GSAAQRLESS DNIYQDIVNF WQQRQVPMRG
GVEPLARDEF NPLSDRQKSL AIEPKSNMYL AVMNHVRRML WLDENADWPV IDPQGLLRRN
DGHASIPAIA ARLSLLGDFH GAHQGYVLTP ALESGLKAFQ RRHGLKDDGV IGPKTLSWLN
QLPIERARLL AVNFVEQSRY QAQLDDSYLL VNIPAFEMVL VDKGQIVLHS RVIVGKSYRQ
TPIMSGAISN LVINPTWTVP RRLLRQDVLP HVRKDGRYLA EKQFDVFNYQ GQKQLLTAEE
WQSLAYTRFP YKLVQRPGEH NSLGRYKFHF NNDKNIYLHD TPTPELFANA ERALSSGCIR
IEKVAELANW FAVHRVNDKR TWRRLQSSKH KTQWFSLTHS LPVHLVYWTA WVDEHHLAQY
RSDIYHRGVQ VPIDLVKN
|
|---|
| |