Gene Sden_1437 details

Gene Information

• Locus tag: Sden_1437
• Symbol: uvrC
• ID: 4017426
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 1675025
• End bp: 1676854
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637955445
• Product: excinuclease ABC subunit C
• Protein accession: YP_562446
• Protein GI: 91792795
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0535013
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAGTT TTAACGCCAC AGAATTCCTA AAAAACTTGT CCTCCTCTGC CGGCGTCTAC 
CGTATGTATG ACGCCAAAGG GGAGGTGATT TATGTGGGTA AGGCAAAAGA TCTAAAAAAG 
CGTTTGTCCT CTTATTTTCG CGCTAACCTT GGCAATATCA AAACTCAGGC TTTGGTGTCT 
CACATTACCA ATATTGATGT GACATTAACC CATAGCGAAA CCGATGCTCT GCTACTTGAA 
AATGATTACA TCAAGCAATA CATGCCTAAA TACAATGTAT TGCTTCGCGA TGATAAATCT 
TACCCCTATT TATTTTTAAG TGGTCACAAA CATCCAAGGC TTGCCTATCA CAGAGGACCG 
CAACGGGAAA AAGGCCGCTA TTTTGGCCCC TATCCCAATG GCGGCGCGGT GCGTGAAAGC 
TTAAATCTAT TACAAAAGTT ATTTCCCATA CGCCAGTGTG ATGATCTCTA TTACAAGGCG 
CGCACGCGAC CTTGTTTGCA ATACCAATTG GGCCGCTGCA GCGCCCCATG CGTGAATAAA 
GTCACCGATG AAGATTATGC CGAGCAAGTT CAGCTGGCGA GCTTATTTTT ACAAGGTAAA 
GATCAGCAAG TGGTCACCAA CTTGGTGACT AAGATGGAAC AAGCCGCCGA AGAATTTCAT 
TATGAACAGG CCGCGGCGTA TCGTGATCAA ATTACTGCCT TACGTAAGGT TGCCGAGCAG 
CAAGAAGTCT CGTTAGATAA AGGGGATATG GATGTCATCG GTGTGCACTA TGAAAAAGCC 
ATCGCCTGCT TTCATATGCT GTTTATTCGT TCGGGAAAAA TATTTGGTAG TCGCAGTTAT 
TACCCCAGCG TGCCGGCGCA GACTGACATA GATGAAGTGC TCAGTGCCTT TATTAGTCAA 
TTCTATCTTA ATGCCGATGT GCAGCGAACC TTACCTAATG AAGTCATCTT AAGTCAGTCT 
TTTAGTGATA AAGCGGAACT CGAAAGTGCC ATCGCCGAGG CACTAGAGAA AAAGTTCATT 
ATCAAGACTC AAGTGCGCGG CGAAAGGGCA AGTTTTTTGC GTTTAGCACT GACTAATGCT 
ACCAACGCTG TGACGACTCG CCTTGCAGAT AAAAACACCC AAGAGCAGCG CTTTAGTTTA 
CTGGAAGAAG CGTTAGAGCT AGGTCACAGT ATTGGGCGAA TGGAGTGTTT TGATATCAGT 
CATACCATGG GGGAGAGCAC GGTTGCCTCT TGCGTGGTGT TTAATCGAGA AGGCCCCCAT 
AAGGCAGATT ATCGGCGTTA CAACATCTCT GGCATTACCG GCGGGGATGA TTATGCCGCC 
ATGGAGCAGG CGATTAATCG CCGCTTCGAC AAGATAGACA CTAACGGTAA GGTGCCGGAC 
ATTGTGTTTA TTGACGGTGG CCTAGGCCAG TTACGCATAG CCCAAGGCAT AGTAGATGAA 
AAATGTGCTC ACTTAGACAG GCCGCCGCTA CTTATTGGGG TGACCAAAGG GGAAGGTCGA 
AAAGCAGGTT TAGAGACCTT TGTCTTTGGC GGCTCTGAGC AGCAGTTTAA TTTGCCAAGT 
GATAGCGGGG CATTCCACCT TATTTTACAC ATTCGTGATG AGTCACATCG ATTTGCGATT 
ACAGGTCATC GTAATAAAAG GCAAAAGACG CGCAACACAT CAAGTCTTGA GTCTATTGCT 
GGTGTTGGCC CTAAAAGACG TAAAGCCTTA CTGCAGCATT TAGGCGGCTT GCAGGAAGTT 
AAGGGAGCCA GCGTCGCTGA ATTAACAAAA GTGCCGGGAA TTAGCTTAGA AATGGCACAA 
ACAATACATG ACGCATTGCG AGGCGGATAA 

 

Protein sequence

MASFNATEFL KNLSSSAGVY RMYDAKGEVI YVGKAKDLKK RLSSYFRANL GNIKTQALVS 
HITNIDVTLT HSETDALLLE NDYIKQYMPK YNVLLRDDKS YPYLFLSGHK HPRLAYHRGP 
QREKGRYFGP YPNGGAVRES LNLLQKLFPI RQCDDLYYKA RTRPCLQYQL GRCSAPCVNK 
VTDEDYAEQV QLASLFLQGK DQQVVTNLVT KMEQAAEEFH YEQAAAYRDQ ITALRKVAEQ 
QEVSLDKGDM DVIGVHYEKA IACFHMLFIR SGKIFGSRSY YPSVPAQTDI DEVLSAFISQ 
FYLNADVQRT LPNEVILSQS FSDKAELESA IAEALEKKFI IKTQVRGERA SFLRLALTNA 
TNAVTTRLAD KNTQEQRFSL LEEALELGHS IGRMECFDIS HTMGESTVAS CVVFNREGPH 
KADYRRYNIS GITGGDDYAA MEQAINRRFD KIDTNGKVPD IVFIDGGLGQ LRIAQGIVDE 
KCAHLDRPPL LIGVTKGEGR KAGLETFVFG GSEQQFNLPS DSGAFHLILH IRDESHRFAI 
TGHRNKRQKT RNTSSLESIA GVGPKRRKAL LQHLGGLQEV KGASVAELTK VPGISLEMAQ 
TIHDALRGG