Gene Sden_1403 details

Gene Information

• Locus tag: Sden_1403
• Symbol: secD
• ID: 4017340
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 1635306
• End bp: 1637156
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637955411
• Product: preprotein translocase subunit SecD
• Protein accession: YP_562412
• Protein GI: 91792761
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00249908
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTAAATA AATACCCAAT GTGGAAGAAC ATCATGGTGA TGCTTGTCAT CGCTGTTGGT 
GCTTTTTATG CGATCCCAAA CCTATTCGGT GAAGATCATG CAGTTCAAGT TGTTGCCACT 
CGCGGCGCAG AAGTCACGAC TTCGACCCAA ACGAGTGTCA TCGAATTACT CGAGAGCAAA 
GGCATTGCGG TAAAGCGCGC TGAGCTCACA AATGGTCAGT TGCTGGTTCG TGTGCAGAAT 
GGCGAGCAGC AACTAACGGC TAAAGAGGCC ATTGCAGACA GTCTAGGCAA TAAGTTCACT 
GTCGCATTAA ACCTAGCGCC AGCAACCCCT GAGTGGCTAG AAGCCCTTGG TGGTAGCCCA 
ATGAAGCTAG GGCTAGATTT ACGTGGCGGC GTGCATTTCC TGATGGAAGT GGATATGAGC 
GAAGCTGTTC GTAAAATGGA AGAGGCAAAG ATTGCCGATT TCCGTAGTCA ATTACGTGAA 
GAAAAAATTC GCTATGCCGG TGTGCGTAAG ACACCTAAAG GCATAGAAAT TAAGTTCCGT 
GATGCCGACA CTGTGGCGAA AGCCGAAGCT TATTTGAAGA CTCGCGGCAA TGACATGACA 
TTTGCCGATG CCAGTGAAGG CGACAACTTC GTGCTCCGTG CCAACATGAG CGAAGTTTAC 
GTCAAGCAAA TTAAAGAAGA AGCGCTGCAG CAAAACATCA TCACCATTCG TAATCGTGTC 
AACGAATTGG GTGTTGCTGA ACCTGTGGTG CAGCGTCAGG GCGCCGAGCG CATTATTGTT 
GAGTTGCCAG GTGTACAGGA TACGGCTCGC GCCAAGGAAA TCTTAGGTGC AACCGCATCG 
ATTGAATTCC ATATGCTCGA TGATAAAGCC GATCCAAGTG CAGCGGCCAG TGGCCGGGTG 
CCAGCGGGTT CTCAAGTCTA TCCTCGCCGC GAAGGCGGTA TTGCTGTGCT TAAGAAAGAA 
ATCATGCTTA CGGGTAATCA TATTACCGGT GCTCAGCCTT CTTTTGATGA ATACAGTCGT 
CCACAGGTGT CGATTAACTT AGATGCGCAG GGAGGAAATA TCTTCTCTAA CGTGACTAAG 
GACAATATCG GTAAACCAAT GGCAACGCTG TTTATCGAAT ACAAAGACAG TGGTCTGCGA 
AACCCCAATG GCACAGTGAA AATGACCAAG ATTGAAGAGG TTATTTCTGT GGCCACCATT 
CAGGCGCGCC TTGGTCGTAA CTTTGTGATT AACGGCCTTG AACATGCTGA ATCGCAAAAT 
TTAGCCTTGT TATTACGTGC AGGTGCTTTG ATTGCCCCTG TGACTATCGT TGAAGAACGC 
ACCATAGGCC CAAGCCTTGG CGCTGAGAAC ATCCAAAACG GCATGCAAGC CATGATTTGG 
GGTCTTGCGA TCGTTCTGAT ATTTATGATG ATCTACTACC GTGCATTTGG CATCATTGCG 
AACATTGCAT TGCTAGCCAA CATCATCATG GTTGTGGGCG TCATGTCTAT GATCCCAGGT 
GCGGTATTAA CCTTACCCGG TATTGCCGGT ATGGTATTGA CAGTCGGTAT GGCCGTTGAT 
GGTAACGTTT TGATTTATGA GCGTATTCGT GAAGAAATCT TAGCGGGACG CAGTGTGCAA 
CAAGCGATTC ATGAAGGCTA TGCGAATGCG TTATCGACTA TTGCCGATGC CAACATCACA 
ACATTTATGA CTGCACTTAT TATGTTTGCT GTGGGCACCG GCGCCGTTAA AGGTTTCGCC 
GTGACCCTGA TGATAGGTAT CGCGACCTCA ATGTTTACCG CTATCGTCGG AACACGTTCA 
ATCGTGAACG CCGTTTGGGG TGGTAAACGT GTTAAGAAGC TATCTATCTA G 

 

Protein sequence

MLNKYPMWKN IMVMLVIAVG AFYAIPNLFG EDHAVQVVAT RGAEVTTSTQ TSVIELLESK 
GIAVKRAELT NGQLLVRVQN GEQQLTAKEA IADSLGNKFT VALNLAPATP EWLEALGGSP 
MKLGLDLRGG VHFLMEVDMS EAVRKMEEAK IADFRSQLRE EKIRYAGVRK TPKGIEIKFR 
DADTVAKAEA YLKTRGNDMT FADASEGDNF VLRANMSEVY VKQIKEEALQ QNIITIRNRV 
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMLDDKA DPSAAASGRV 
PAGSQVYPRR EGGIAVLKKE IMLTGNHITG AQPSFDEYSR PQVSINLDAQ GGNIFSNVTK 
DNIGKPMATL FIEYKDSGLR NPNGTVKMTK IEEVISVATI QARLGRNFVI NGLEHAESQN 
LALLLRAGAL IAPVTIVEER TIGPSLGAEN IQNGMQAMIW GLAIVLIFMM IYYRAFGIIA 
NIALLANIIM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EEILAGRSVQ 
QAIHEGYANA LSTIADANIT TFMTALIMFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS 
IVNAVWGGKR VKKLSI