| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1397 |
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| Symbol | |
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| ID | 4017334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1629376 |
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| End bp | 1630056 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637955405 |
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| Product | ribonuclease T |
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| Protein accession | YP_562406 |
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| Protein GI | 91792755 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
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| TIGRFAM ID | [TIGR01298] ribonuclease T |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000000120149 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGATA TTTGCGACAG TAATAAACTA AACCACCGTT TCCGCGGTTA CTACCCTGTG
GTTATCGATG TTGAAACCGC AGGATTCAAT GCAAATACAG ATGCCTTACT TGAGATAGCT
GTTACCTTAT TAAAAATGAA CGATGACGGG ATCTTAGTGT TAGACAAAAC CGTTCATTTT
CATATAGAAC CCTTTGAAGG CGCGAACTTA GAGCCTGAAG CGTTAGCCTT TAATGGTATC
GACCCTACTA ATCCCCTTAG GGGAGCAGTA TCTGAAAAAG AAGCTTTTCT TGAAATTTTT
AAAACAGTGA AAAAAGGACA GAAAGCCTCA GATTGTCATC GAAGCATCAT AGTCGCACAC
AACGCCGCAT TTGATTTAAG TTTTGTGAAT AAAGCTATAG AGAGAAATGA TCTCAAACGC
TCTCCTTTCC ACCCCTTTGC AAGCTTTGAT ACCGCTACCC TAGCCGGATT ATCCATAGGC
CATACCGTAC TGGCTAAAGC GTGTAAAATG GCGGGTATAG ACTTTGATAA TAAAGAAGCC
CACTCAGCGT TATATGATAC AGAAAGAACC GCAGAACTGT TCTGCCACAT AGTCAATCGC
TGGAAAGCAC TTGGTGGTTG GCCATTGGCC ACTCCAGAGC AAAGCGCCAT TGAAAATACA
GATGAGAAAA TAGAGAGTTA A
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| Protein sequence | MPDICDSNKL NHRFRGYYPV VIDVETAGFN ANTDALLEIA VTLLKMNDDG ILVLDKTVHF
HIEPFEGANL EPEALAFNGI DPTNPLRGAV SEKEAFLEIF KTVKKGQKAS DCHRSIIVAH
NAAFDLSFVN KAIERNDLKR SPFHPFASFD TATLAGLSIG HTVLAKACKM AGIDFDNKEA
HSALYDTERT AELFCHIVNR WKALGGWPLA TPEQSAIENT DEKIES
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