| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1389 |
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| Symbol | |
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| ID | 4017352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1619279 |
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| End bp | 1621945 |
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| Gene Length | 2667 bp |
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| Protein Length | 888 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955391 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562398 |
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| Protein GI | 91792747 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.109135 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTGGC ACGACTTTTC AGAACTGCAA AAGCGTCAAT GGCAACACGA TATCGACTTG
GTCGCATCCT TGACCGAGGG GGCAATTGTA TTGCTTAGCA GTGAGCAAGG CGCGATTCAA
GAACCGTCTC ATGATGATTC TAATGAGAGT GCAGTTGTGA TTTCCTTCGC CGTGGATGCC
AATAATACCC TTGATAGTTG GAAAATGGAC GATTTAGCCC AATTAGATAC TAAAGCAAAG
GCATCCCCAC AAGGCGTTGT TGGCTACTAT GAGTTTGGGG CTGACACTGG CCCAACAGCT
AAGGCCTTAA AGCATAAAAA ACTTTCCATA ATCGATGTCG AGGCCACAAA ACCTGGCATA
GTGGAAGTAA ATCAGCATAT TTCAGCGTTT GCTAAACCTT TGACTTGGCC TTCTGGTGTG
CATTTTGCTA CTTTATGTGC CCTGAGAAAA CCGCCTTTGA TGTTAAATAA CACTATGTTA
CAGCTTGCCA ATTTGTTATG TGAACACCTG CAGCTAAAGC TGAACCAAGA ATCCCCTGCT
ATCCCATTCA TATTGCCTTC TCTATCATCA GAAGACGGTA ATGAAAATGC ACAAGTGAGC
ATAGATAGAA GTGCGCCTAA AGGAATGGAT TTACAAGTTT TTATTGATAG CTTTGAAGAG
CACGTGTGGA TAAAGAACCC CCAAGGGGTC TATGTGTTTT GTAATCGCCG AGTCGAACAG
GCTTGGGGAA GAAGCAAACA AGATATCTTG GGTAAGACAG ATTTAGAGCT TTTCGATGAA
GCGCTGGCTC AACGTTTTAT TGAAGGTGAT AAGCTTGCCA TCGCTCAAGG TGGACCCGTA
ATTGTGGCAG AATGTAAAGA CAGAGATCAG CTATCGCAAT CCACTTGGCT TGAAACCTTT
AAAACCCCTG CAGTTACCGC AGAGGGAGAA CTGGTTGGTG TTATTGGTGT CACTCGTAAT
ATTGCCAAGC ACAAAGCCGC AGAAGAGCAA CTAAATCTTG CCGCAACAGT GTTCAGCAAT
ACCGTCGAAG GCGTTGTGAT AACAGATAGA AAAGGCTTTA TCACCGAGGT CAATAGCGCA
TTTACGAAGA TCACTGGCTA TGAACTGGAT GAAGTGAAAG GCAAAAATCC GAATGTGTTA
AGTTCAGGTC ACCATGACCA ATTATTTTTT GAAAAACTGT GGAATACTTT ACTTATCCAA
GGACGATGGC AGGGAGAAAT TTGGAACCGT CGTAAGAATG GTGAGGTCTA CCCCCAAGAA
ATTACGATTA GCGCCGTTTA TGATGATAAT GACACCATAG CCTATTTTGT GGCTGTGTTT
ACCGATGTCT CAGAGCAACG TAACACTCAA GCTAAGCTGG ATAAACTGAG CTTACATGAT
CCGTTAACTC AACTGCCCAA TCGTGCACAG TTTATGTCTC GTATAGACAA TGCAATTTAT
TATGCCAAAC AGGAAGGCAC TCAGTTGGCC GTGGTGTTTA TAGATGTGGA CTTTTTTAAA
CATATTAATG ACAGCTTAGG TCACGTTGCA GGCGACACCA TTCTCGTTGA GCTTGCCAAT
CGACTTAGCA GTATTTTACA TCCCGGGGCC GTGCTATCTC GGCTTGGAGG CGATGAATTT
TCATTGCTTA CCAACATGGC CAGCACTGAT AATTTAATCG CGATTGTGAA TCGTATCTTT
TCTGTATTCG AAGCCCCTTT TAGTTGCAGC AATGGTCAAA GCATTCGCTT GACGGCGAGT
ATGGGCCTCG CGTTATACCC AAGCGATGGT AAGGATAATG ATGGTCTATT ACGCAATGCT
GATGCTGCTA TGCATAGGGC TAAACAAGAT GGTCGTAATA ACTATGCATT TTATACTGAG
GCCATGACAC AGGAGTCAGT GCGCTTACTG CAATTACAGA GTGCGCTTCA CGAAGGGCTA
AAGATGCAGC GTTTCTCCCT GGTCTATCAG CCAAAGGTGG ACTTACACAG CTTAGAAACC
ATGGGTTTCG AAGCGCTATT GCGTTGGAAT GACCCAATTC TGGGGAGTGT ATCGCCAGCT
GTGTTTATTC CTATCGCCGA GAAAACCGGG TTAATTAATG AAATAGGTAT GTGGGTGCTG
AAAACGGCTT GTGAGCAAGG AGTGAGATGG CTTTCACAAG GTAAATTGTT CAACCGTATT
GCGGTTAATG TTGCAAGTCT TCAGCTTCAA CGTAATAGCT TTGTCGATGA TGTGCAGCAA
GTGCTACTAG ATACGGGCTT ACCTGCTCAG CATCTTGAGC TCGAAGTGAC TGAGTCTTGT
ATGCTGCAAA ATCCCGCCGA AGCGATCATT GAATTGAAGC GATTACGTGA AATGGGCATA
ACCTTAGCCA TGGATGATTT TGGTACTGGC TATTCCTCTT TGAGCTATCT TAAAAAGTTG
CCCTTAGATA AATTAAAAAT TGATCGCTCC TTCATTAAAA ACATTGTCCA AGATGCCAAT
AATGCTGCCA TTGCAAAGGC GGTGATTGCC TTGGGCCATG CACTTAATTT ACAAATCGTG
GCAGAAGGGG TGGAAACCAA AGAACAGGCT GAGTTTTTGC GGCTGAACGA TTGTGAGCAA
GCGCAAGGTT ATTACTTTAG TCACCCAAAA CCCAGTCATG AATTGGACGA TTTTTTGGAA
AATTCACCTC CCATTAAAAT ACGGTAA
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| Protein sequence | MNWHDFSELQ KRQWQHDIDL VASLTEGAIV LLSSEQGAIQ EPSHDDSNES AVVISFAVDA
NNTLDSWKMD DLAQLDTKAK ASPQGVVGYY EFGADTGPTA KALKHKKLSI IDVEATKPGI
VEVNQHISAF AKPLTWPSGV HFATLCALRK PPLMLNNTML QLANLLCEHL QLKLNQESPA
IPFILPSLSS EDGNENAQVS IDRSAPKGMD LQVFIDSFEE HVWIKNPQGV YVFCNRRVEQ
AWGRSKQDIL GKTDLELFDE ALAQRFIEGD KLAIAQGGPV IVAECKDRDQ LSQSTWLETF
KTPAVTAEGE LVGVIGVTRN IAKHKAAEEQ LNLAATVFSN TVEGVVITDR KGFITEVNSA
FTKITGYELD EVKGKNPNVL SSGHHDQLFF EKLWNTLLIQ GRWQGEIWNR RKNGEVYPQE
ITISAVYDDN DTIAYFVAVF TDVSEQRNTQ AKLDKLSLHD PLTQLPNRAQ FMSRIDNAIY
YAKQEGTQLA VVFIDVDFFK HINDSLGHVA GDTILVELAN RLSSILHPGA VLSRLGGDEF
SLLTNMASTD NLIAIVNRIF SVFEAPFSCS NGQSIRLTAS MGLALYPSDG KDNDGLLRNA
DAAMHRAKQD GRNNYAFYTE AMTQESVRLL QLQSALHEGL KMQRFSLVYQ PKVDLHSLET
MGFEALLRWN DPILGSVSPA VFIPIAEKTG LINEIGMWVL KTACEQGVRW LSQGKLFNRI
AVNVASLQLQ RNSFVDDVQQ VLLDTGLPAQ HLELEVTESC MLQNPAEAII ELKRLREMGI
TLAMDDFGTG YSSLSYLKKL PLDKLKIDRS FIKNIVQDAN NAAIAKAVIA LGHALNLQIV
AEGVETKEQA EFLRLNDCEQ AQGYYFSHPK PSHELDDFLE NSPPIKIR
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