| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1388 |
|---|
| Symbol | |
|---|
| ID | 4017351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1618428 |
|---|
| End bp | 1619018 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637955390 |
|---|
| Product | regulatory protein, TetR |
|---|
| Protein accession | YP_562397 |
|---|
| Protein GI | 91792746 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA GTACCCAAGA TACACGCCAA CACATTTTAG ACACAGGCTA TCAATTGATA
GCCTGTCGTG GTTTTGTGAG TGTCGGCCTG TCCGAATTAC TTAACCATGC CCAAGTACCT
AAGGGATCTT TTTACCACTA TTTCAAATCT AAAGAGCAGT TCGGTGAAGC CCTTATTGAG
TATTACTTCG ATAATTACCA ACAACAACTC CACAGCCAAT TTGCTAATCT AGAAGGTTCA
GCCTACGACA GATTGATGAA CTATTGGCAG TGCTGGATGA CTTCCCAAGC TGACAACTAT
TCATCTCAGA AATGCCTAGT GGTAAAACTG AGCGCCGAAG TGGCCGATTT ATCAGAACCT
ATGCGCATCG CCCTATTAAA AGGCACGCAA ATCGTTCAGC TGGCTATCAG CGACTGCATT
AAAGCGGGCA TTACAGATGG AAGCATTAAA GAGACGAATT CTGATGACAC AGCTAAACTG
CTTTATCATT TGTGGATTGG CGCAAGTTTA ATGGCAAAAC TCAGTAAAAC AGATTCAGGA
TTACAACAAG CAATGGCCAC CACTGAATTA CTATTGAAAC CTGGCGGCTA A
|
|---|
| Protein sequence | MKTSTQDTRQ HILDTGYQLI ACRGFVSVGL SELLNHAQVP KGSFYHYFKS KEQFGEALIE
YYFDNYQQQL HSQFANLEGS AYDRLMNYWQ CWMTSQADNY SSQKCLVVKL SAEVADLSEP
MRIALLKGTQ IVQLAISDCI KAGITDGSIK ETNSDDTAKL LYHLWIGASL MAKLSKTDSG
LQQAMATTEL LLKPGG
|
|---|
| |