Gene Sden_1386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1386 
Symbol 
ID4017349 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp1616459 
End bp1617139 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content48% 
IMG OID637955388 
ProductThiJ/PfpI 
Protein accessionYP_562395 
Protein GI91792744 
COG category[R] General function prediction only 
COG ID[COG0693] Putative intracellular protease/amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.694621 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATTT TGATGGTATT AACCTCACAC GACAAACTCG GTGACACAGG TAACAAGACT 
GGCTTTTGGT TGGAAGAGTT CACCTCGCCT TATTATACAT TTGCCGACCA AGGCGCAGAG 
ATAGTATTAG CCTCGCCCCT TGGTGGCCAG CCGCCACTGG ATCCAAGCAG TGATGAACCC 
GGCTTTCAAA CTGCAACCAC AGAGCGTTTC AAAGGCGATT CTGCAGCGCA AACCCTGCTT 
GCCAACACTG TGCGTCTTGA TGGCATAAAT CTGGACGATT TTGATGCCGT GTTCTATCCA 
GGTGGCCACG GTCCATTATG GGATTTAACT GAAGACAAGC ACTCTATTGC CTTGATTGAA 
AACGCGTATC AGCAAGGCAA GCCGCTAGGT CTCGTATGTC ATGCATCAGG CGCCCTGCGC 
CACGCTAAAA ATATTGACGG CAGCTTTTTA GTAAAAGGTA AAAAAGTCAC TGGCTTTACC 
AATAGTGAAG AAGATGCAGT GCAACTGACT GCCATCGTGC CTTACTTGGT TGAAGATGTG 
TTAAAACAAA ATGGCGGCAT CTACACCAAA GGTGAAGATT GGGCCAGCCA TATAGCCATC 
GATGGCAACT TAGTGACAGG GCAAAACCCA GCATCATCGC AAGCCGTAGC CGAAGCTATG 
CTGACCTTGT TAAAGGGCTA G
 
Protein sequence
MKILMVLTSH DKLGDTGNKT GFWLEEFTSP YYTFADQGAE IVLASPLGGQ PPLDPSSDEP 
GFQTATTERF KGDSAAQTLL ANTVRLDGIN LDDFDAVFYP GGHGPLWDLT EDKHSIALIE 
NAYQQGKPLG LVCHASGALR HAKNIDGSFL VKGKKVTGFT NSEEDAVQLT AIVPYLVEDV 
LKQNGGIYTK GEDWASHIAI DGNLVTGQNP ASSQAVAEAM LTLLKG