| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1115 |
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| Symbol | metH |
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| ID | 4017658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1280183 |
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| End bp | 1283908 |
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| Gene Length | 3726 bp |
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| Protein Length | 1241 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637955107 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_562126 |
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| Protein GI | 91792475 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACAG CAGCACACAG CACTACCTTA GTCCAACTCA CTGAATTATT AGCACAGCGC
ATAGTGATGC TGGATGGCGC CATGGGTACC ATGATCCAAG ACTACAAGCT GGAAGAAGCA
GATTATCGCG GCCAGCGCTT TAAGGATTGG CACTGCGATG TCAAAGGTAA CAATGACTTA
TTGGTGTTGA GTCAGCCGCA AATCATCAAA CAAATTCACC TAGATTACCT GCTCGCTGGC
AGTGACATCA TAGAAACCAA CACCTTTAAC GCCACCACTA TCGCCATGGC CGACTATGAC
ATGCAGGCAT TGGCGGCTGA AATCAACCAA GTGGGCGCCC GCCTTGCACG GGAAGCTGCC
GATGAAATTA GCACGCAAAC TGGCATTCGC CGTTATGTTG CTGGGGTCCT TGGGCCCACC
AACCGCACTT GCTCCATCAG CCCAGATGTG AACGACCCAA GCTTTCGCAA TGTGAGTTTC
GATCAACTCG TTAAGGCCTA TCTTGAGTCC AGCTTAGCCT TAATCCAAGG CGGCGCCGAC
ATCATCATGG TGGAAACCAT ATTCGATACC TTAAACGCCA AGGCGGCGCT GTTTGCCATC
GAAAAAGCCT TCGATGTTTT AGGTGAGCGC TTACCTGTGA TGGTGTCTGG CACGATAACG
GATGCCTCGG GCCGTACTCT CACAGGGCAA ACCACAGAGG CCTTTTATAA CTCACTGCGT
CACATTAAGC CCATTTCCAT CGGCCTTAAT TGCGCCCTAG GGCCAAAAGA GCTGCGCCCT
TATGTCGAAG AGTTAGCAAG AATTTCAGAA ACCTATATTT CAGTTCACCC TAACGCTGGC
CTGCCCAATG AGTTTGGCGG CTATGATGAA ACCCCAGCGG AAATGGCTGA AATTCTCGCT
CAATGGGCCG AAGAAGGGCT GGTGAATATC GTTGGCGGTT GCTGCGGCAG TACTCCAGCT
CACATTCGCG CTATCGCAGA GGCGGTAGAT AAATTCGATG CCAGAGCCTT GCCTGATATT
GCCATCGCCT GCCGCTTATC TGGCCTTGAG CCCTTGACCA TAGACAGTAA CTCCTTATTC
GTGAACGTGG GCGAGCGCGC CAATGTGACA GGCTCTGCCA AGTTTTTGCG CTTAATTAAA
GAAGAGAAAT TCGAAGAAGC CTTAGATGTG GTGCGTGAGC AAGTGGAAAA CGGCGCCCAG
ATCATCGACG TCAACATGGA TGAAGGCATG CTAGATGGCG TGGCGGCCAT GAGTCAGTTT
TTAAACTTAA TTGCCTCTGA GCCCGATATC TCACGGGTGC CCATCATGAT TGACTCCTCC
AAATGGGAGG TCATAGAAGC CGGGCTTAAG TGCGTGCAAG GCAAGGCCAT AGTCAACTCC
ATTTCCATGA AAGAAGGCGA AGCTGCCTTT ATCAAACAGG CCACCTTAGT GAAGCGCTAT
GGCGCCGCCG CTATCGTGAT GGCGTTTGAT GAAGACGGTC AGGCAGACAC CCGCAAGCGT
AAAACCGAGA TTTGCACCCG CGCCTATCGC CTCTTGGTGG ATGTGGTGGG CTTCCCTCCC
GAAGACATTA TTTTTGACCC TAATATTTTC GCCATCGCCA CCGGCATCGA TGAACACGAT
AACTACGCGG TGGACTTTAT CGAGTCCATC AAAGACATTA AGGCGAACCT ACCCCATGCG
ATGATTTCCG GCGGCGTCTC CAACGTGTCC TTCTCATTTC GTGGCAATAA TCCGGTGCGC
GAAGCCATAC ACGCCGTGTT TTTATACCAC GCCATTCAAG CGGGCATGGA CATGGGCATA
GTTAACGCCG GTCAATTGGC GATTTATGAT GATATCGACC CAGAGCTTAA ACTCAGGGTC
GAAAACGTGG TGCGCAACTT ACCTTGCCCA GTGGCGGACT CCAGTAACAC AGAGCAATTA
TTAGAAATCG CCGAGCAGTT TCGCGGCGAT GGCAGTCAAG AGGTCAAAAA AGAGGACTCA
GCCTGGCGCA GTTTGCCGGT GGCAGAGCGC TTATCTTATG CCTTAGTGAA AGGCATCACA
GAATTTATCG ATGAGGACAC AGAAGCTGCA CGCCTTGAGT CCGTGCGGCC ACTGGACGTC
ATCGAAGGCC CCTTGATGAA TGGCATGAAT GTGGTGGGCG ACTTATTTGG CTCGGGCAAG
ATGTTCCTGC CGCAAGTGGT CAAGTCCGCA CGGGTAATGA AAAAAGCCGT GGCCTACTTA
AACCCCTATA TTGAGCTTGA AAAGGTTGAG GGTCAGTCCA ACGGCAAAAT CTTGATGGTG
ACGGTAAAAG GCGATGTGCA CGACATAGGC AAGAATATTG TCGGCGTGGT ATTGGCCTGT
AACGGTTATG AGGTTATAGA CCTTGGGGTC ATGGTCTCCA TTGAGAAAAT CATCGAGGTA
GCACGGGCTG AAAAGGTCGA CATCATCGGC ATGTCTGGGC TTATCACCCC AAGCTTGGAT
GAAATGGTGC ACAACGTAAA AACCTTAATT CGCGAGGGCT TAAGCCTGCC GGTTATCATA
GGCGGCGCCA CTTGCTCAAA AATTCATACC GCAGTGAAAA TCGCCCCGCA TTATCCCCCT
GGCGCCATTT ATATTGCCGA TGCCTCCCGC GCTGTGCCCA TGGTGGCAAA GCTGATTGGC
AATCAAACTC GGCAAGACAC TATCGATGCC ACCTATGTGG AATACCAAGA GATGCGCGAA
AAGCGTTTAT CGCAAACTAA GCGTAAAACC ATCACAAGCC TTGCTAAAGC GCGGGAAAAC
CGCTGCCAAC ACGACTGGCA AGATTACACC CCGGTTAAGC CTAAAATACT GGGCCGCCAA
GTGTTTGAAG ATTATCCGTT AAGCGATTTA GTTGAGCGTA TCGATTGGAC ACCGTTTTTC
AGAAGTTGGG AGCTCCATGG CCGTTATCCT GAAATTTTAA ACGACAAAAT CGTCGGCGTT
GAAGCCCAAA AGCTGTTTGA GGATGGCAAA GCCATGCTAG AACAAATCAT CAGTGAGAAG
TGGCTCACCG CCAAGGCGGT CATTGGGCTG TTTCCCGCCA ATACAGTGAA CTTTGATGAT
ATCGAGCTAT ACGCGTGTGA CGGCACTGAT GAAGACCGAA GCCAGCCTAT CATGACCACC
CATCATCTAC GGATGCAGCT TGAGCGTGTG GGCAATGATA ACTTTTGCCT CGCCGATTTT
GTCGCGCCAA AAGACTCTGG GGTTGCCGAT TACATGGGCG GGTTTGCGGT CACCGCAGGT
CACGGTATTG ATGAGCATGT GGCCCGCTTT GAGGCCAATC ACGATGACTA CAGCGCCATC
ATGCTTAAGT GCTTGGCTGA CAGATTAGCA GAAGCCTTTG CAGAAAGAAT GCACGAGCGG
GTGCGTAAAG AATTCTGGGG TTACGCAGCC GATGAAACCT TAGATAACGA AGCGTTAATT
CGCGAGAAAT ACAAGGGCAT ACGCCCCGCA CCCGGCTACC CGGCATGTCC TGATCACACT
GAAAAAGGCT TGTTATGGGA GCTGCTCAAA CCCGATGAAA CGATAGGGCT CAATATCACC
GAAAGCTACG CCATGTTCCC CACTGCAGCG GTGTCCGGTT GGTACTTCGC CCACCCCAAA
TCCCGCTACT TCGGCGTCAC CAACATAGGT CGCGATCAAG TGGAAGACTA CGCAGCCCGT
AAGGGTATGA GCGTCACAGA AACCGAACGC TGGTTAGCAC CAGTGCTAGA CTATGATCCT
GAGTAA
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| Protein sequence | MATAAHSTTL VQLTELLAQR IVMLDGAMGT MIQDYKLEEA DYRGQRFKDW HCDVKGNNDL
LVLSQPQIIK QIHLDYLLAG SDIIETNTFN ATTIAMADYD MQALAAEINQ VGARLAREAA
DEISTQTGIR RYVAGVLGPT NRTCSISPDV NDPSFRNVSF DQLVKAYLES SLALIQGGAD
IIMVETIFDT LNAKAALFAI EKAFDVLGER LPVMVSGTIT DASGRTLTGQ TTEAFYNSLR
HIKPISIGLN CALGPKELRP YVEELARISE TYISVHPNAG LPNEFGGYDE TPAEMAEILA
QWAEEGLVNI VGGCCGSTPA HIRAIAEAVD KFDARALPDI AIACRLSGLE PLTIDSNSLF
VNVGERANVT GSAKFLRLIK EEKFEEALDV VREQVENGAQ IIDVNMDEGM LDGVAAMSQF
LNLIASEPDI SRVPIMIDSS KWEVIEAGLK CVQGKAIVNS ISMKEGEAAF IKQATLVKRY
GAAAIVMAFD EDGQADTRKR KTEICTRAYR LLVDVVGFPP EDIIFDPNIF AIATGIDEHD
NYAVDFIESI KDIKANLPHA MISGGVSNVS FSFRGNNPVR EAIHAVFLYH AIQAGMDMGI
VNAGQLAIYD DIDPELKLRV ENVVRNLPCP VADSSNTEQL LEIAEQFRGD GSQEVKKEDS
AWRSLPVAER LSYALVKGIT EFIDEDTEAA RLESVRPLDV IEGPLMNGMN VVGDLFGSGK
MFLPQVVKSA RVMKKAVAYL NPYIELEKVE GQSNGKILMV TVKGDVHDIG KNIVGVVLAC
NGYEVIDLGV MVSIEKIIEV ARAEKVDIIG MSGLITPSLD EMVHNVKTLI REGLSLPVII
GGATCSKIHT AVKIAPHYPP GAIYIADASR AVPMVAKLIG NQTRQDTIDA TYVEYQEMRE
KRLSQTKRKT ITSLAKAREN RCQHDWQDYT PVKPKILGRQ VFEDYPLSDL VERIDWTPFF
RSWELHGRYP EILNDKIVGV EAQKLFEDGK AMLEQIISEK WLTAKAVIGL FPANTVNFDD
IELYACDGTD EDRSQPIMTT HHLRMQLERV GNDNFCLADF VAPKDSGVAD YMGGFAVTAG
HGIDEHVARF EANHDDYSAI MLKCLADRLA EAFAERMHER VRKEFWGYAA DETLDNEALI
REKYKGIRPA PGYPACPDHT EKGLLWELLK PDETIGLNIT ESYAMFPTAA VSGWYFAHPK
SRYFGVTNIG RDQVEDYAAR KGMSVTETER WLAPVLDYDP E
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