Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1052 |
Symbol | |
ID | 4017559 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 1203309 |
End bp | 1204220 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637955044 |
Product | amino acid ABC transporter |
Protein accession | YP_562063 |
Protein GI | 91792412 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGTTCA GCGCATCGAT ACACGGCAAT TTGCTCAGGG TATTATCTCA AGCCTTAGCC ATAACGGGCT TATTTATGGG TCAAGGTGCC CTATCTGCTC GACCTTTATT CGCGGTTCTT GCTTGTTTAA GTTTGATCAC CTTTAGTGGC ACTAGCCTTG CTGAGCATGC CAAGTTAATT GATGTTGAAG TGTTAACCCA GCAATTATCC CATGAGCACG GCACCCAATC ACAAGTGAAC AGCATCATCT TAGCCGCAGA AGACAGCTGG CCCCCTTTTG CCGATCAGTT TGGCAAGGGT ATTTCTCATC AACTGGTCAA GTCTGCCTTT GCTGAAGTGG GCATCCGCGT GGAAACCTTA GTTGTGCCTT ACTCTCGTGG CCTTCGAATG GCTGAACGCG GCAATGTGGA CGGTGTCTTT AATGTCACCA GAGAAGTTAG CACTCAAGAT AAATTCATCT TCGGTCAGCA ACCATTGTTT CAGGCCTCCG CCTCTTTCTA TCAGCATAAA TCGCACCCCA TCAGCGCCAA AAGTAAATAT GACTTAGCCC CGAAGGCTGT GATTGGCGTC ATCAAAGGCT ACGAATACGG CGATGAATTT CCCCAATTGG TGAAGCAAAA AGACTGGGTA CTATTTATTG CCAATAACCA GATGCAATTG ATCAACATGT TGTTAGTCAA CCGAATTGAT TTAGCCGTGA TGTTTGATGC CGTGGCCAAG GAGCAGCTCA CTCAGATGGG CGTTAATGAA GAAATCCAGC CGATATTTAA CAATCACCAG AGTGACATTT TTGTCGCGTT TTCCAAGCAA CAACCAAATT CATCACTGTT AGCAAAAAAA CTCGATGAAG GCTTAATCAA GCTGAAAAGT CAGGGACAAT ACGCTAAACT CCTGCTTCCT TTGAAAAATT GA
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Protein sequence | MMFSASIHGN LLRVLSQALA ITGLFMGQGA LSARPLFAVL ACLSLITFSG TSLAEHAKLI DVEVLTQQLS HEHGTQSQVN SIILAAEDSW PPFADQFGKG ISHQLVKSAF AEVGIRVETL VVPYSRGLRM AERGNVDGVF NVTREVSTQD KFIFGQQPLF QASASFYQHK SHPISAKSKY DLAPKAVIGV IKGYEYGDEF PQLVKQKDWV LFIANNQMQL INMLLVNRID LAVMFDAVAK EQLTQMGVNE EIQPIFNNHQ SDIFVAFSKQ QPNSSLLAKK LDEGLIKLKS QGQYAKLLLP LKN
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