| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1028 |
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| Symbol | deoD |
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| ID | 4017073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1176420 |
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| End bp | 1177130 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637955020 |
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| Product | purine nucleoside phosphorylase |
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| Protein accession | YP_562039 |
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| Protein GI | 91792388 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0813] Purine-nucleoside phosphorylase |
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| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.263223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTACAC CACACATTAA CGCAGTACCA GGCGCTTTTG CAGAAACAAT GTTGTTTCCT
GGCGATCCAT TACGCGCAAA ATACATTGCT GAGACGTTCT TAGAAAACGT AGAGCAAGTG
ACTGACGTAC GTAACATGTT AGGTTTCACT GGTACCTATA AAGGTAAGCG CATTTCGGTT
ATGGGTAGCG GCATGGGTAT CCCTTCAGCC TCTATCTATG CTTATGAATT GATTAAAGAA
TATGGCGTTA AAAACCTTAT TCGTGTGGGT ACTTGTGGCG CTATCAGCAC TGACGTTAAA
GTCCGTGACG TGATCATCGC CATGGGGGCT TGTACTGACT CTAAAGTGAA CCGTTTACGT
TTCAAAGATC ATGATTTTGC TGCCATTGCA GATTACAGCC TATTAAGCGC TGTGGTAGAT
TCCGCCAAAG AGCACGGCAC ACAAATCCGT GTGGGTAACG TCTTCTCTGC AGATCTTTTT
TACACGCCAG ATCCACAGAT GTTTGATGTA ATGGAAAAAA TGGGTGTGTT AGGCGTCGAG
ATGGAAGCCG CTGGTCTTTA TGGCGTAGCT CATGAACTCG GTGCTAAAGC CCTATGTGTT
GTGACAGTCT CTGATCACAT ACGTACTGGC GAAAAAACCA CTTCAGATGA GCGTCAAACC
ACATTTAATG ACATGATCAT CATGACATTG GATGCGGCTA TCACGCTGTA A
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| Protein sequence | MATPHINAVP GAFAETMLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGKRISV
MGSGMGIPSA SIYAYELIKE YGVKNLIRVG TCGAISTDVK VRDVIIAMGA CTDSKVNRLR
FKDHDFAAIA DYSLLSAVVD SAKEHGTQIR VGNVFSADLF YTPDPQMFDV MEKMGVLGVE
MEAAGLYGVA HELGAKALCV VTVSDHIRTG EKTTSDERQT TFNDMIIMTL DAAITL
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