Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1019 |
Symbol | |
ID | 4016587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1164035 |
End bp | 1166140 |
Gene Length | 2106 bp |
Protein Length | 701 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637955011 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_562030 |
Protein GI | 91792379 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000461081 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTCACG TGAATCCAAT TGTAAAGAGT TTTGAGTATG GTCAACATAC AGTCACCTTA GAAACAGGTG TTATTGCACG TCAAGCAGAT GCTGCAGTTT TAGCAAGCAT GGGCGATACC ACAGTACTAG TTACTGTTGT TGGTAAAAAA GTAGCGGATT TAAGCCGTGA CTTCTTCCCG CTAACTGTTA ACTATCAAGA AAAAACCTAC GCTGCGGGTA AAATTCCTGG CGGTTTCTTC AAACGTGAAG GTCGTCCATC AGAAGATGAA ACTCTGATTG CACGTCTTAT TGACCGTCCT ATTCGTCCTT TATTCCCTAA CGGTTTTAAA AACGAAGTTC AAGTTATCAT CACTGTGGTT TCTGTTGACC CACAAATCGA GCCAGATATT ATTTCGATGA TAGGTACTTC TGCGGCCTTA GCTATTTCTG GTATTCCATT CAGCGGCCCA CTAGGTGCGG CGCGTGTGGG TTATATCAAT GGCGAATACC TACTTAACCC AACAGTTGAC CAGCTTGCAA CAAGCTCACT TAACTTAGTG GTAGCAGGTA CTAAAGCTGC GGTTCTTATG GTTGAATCTG AAGCCAAAGC CCTTGCAGAA GAAATCATGC TAGGCGCGGT AACTTACGGT CACGATCAAC AACAAGTGGT TGTCGATGCG ATTGCTGAAT TTAAAGCAGA AGCTGGCAAG CCAACGTGGG ATTGGACTGC ACCAGTTCAA GATCAAGCGT TAGTCGCAAA AATCAAAGAG CTTGCAGAAG CTGGCATGAC AGATGCGTAC CAAATTGAAG TTAAGCAAGA CAGATATGTT CAAGTCGGTG TTGTTAAAGC TGCTGCAAAA GCGGCATTAG TTGCTGAAAA TCCAGATGTT GATACTCGTG AAGTAGATAA CTTATTGGGT AGTCTAGAGA AAAACGTAGT ACGTAGCCGC ATCATCGCGG GTAAGCCACG TATCGACGGC CGCGAACCAG ACATGATCCG TGCGTTGAAC GTATTAGCAG GCGTACTGCC ACGTACTCAC GGTAGTTCAT TGTTTACCCG TGGTGAAACT CAGGCATTAG TGACTTGTAC GTTAGGTACT GAGCGTGATG CACAGAAGAT TGACAGCATC ATGGGTGAGC GTACTAACCG CTTCATGCTT CACTATAACT TCCCTCCATA CTCTGTTGGT GAAACAGGCA TGGTAGGTTC ACCTAAGCGC CGCGAAATCG GTCATGGTAA GTTAGCGTGG CGCGGTATGA ATGCCGTTAT GCCTACAGCT GAAGAATTCC CATACAGCAT CCGCGTAGTA TCAGAGATTA CTGAATCAAA TGGTTCAAGC TCTATGGCTT CTGTTTGTGG TACTTCATTA GCATTGATGG ATGCCGGCGT ACCAATCAAG ACTTCTGTTG CTGGTATTGC AATGGGTCTA GTTAAAGAAG GCGACGATTT CGTTGTACTT TCTGACATTC TAGGCGACGA AGATCATTTA GGTGACATGG ACTTTAAAGT TGCTGGTACT CGTGATGGTA TTACTGCTCT GCAGATGGAT ATCAAAATCG AAGGCATCAC TAAAGAAATC ATGGATATCG CACTGCAACA AGCTTATGGC GCACGTGTTC ATATCCTAAA CGTGATGGAC CAAGCGATTG GCACGCATCG TGGCGATATC TCTGCACATG CTCCACGCAT CACCACAATC AAGATCAACC CAGAGAAAAT CCGTGATGTT ATTGGTAAAG GCGGCGCGGT AATTCGTGCA CTTACCGAAG AAACTGGCAC GACTATCGAG CTTGATGATG ACGGTACTGT GAAGATTGCC TCTTCAAACG GTGAAGCGAC TAAAGAAGCT ATCCGCCGTA TCGAAGAAAT TACCGCTGAA GTTGAAGTGG GTCGTGTCTA CAACGGTAAA GTTATCCGTA TCGTAGATTT CGGTGCCTTC ATTAACATTC TTCCTGGTAA AGATGGTTTA GTTCACATTT CACAGATCAG TGATGAGCGC GTTGCTAACG TGTCAGATCA TCTTGAAATG AACCAAGACG TTAAAGTTAA GGTCATGGAA GTGGATCGTC AAGGCCGCGT AAGATTGTCT ATCAAAGAAG CACAAGAGAA AGTGGCTGCT GAATAA
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Protein sequence | MGHVNPIVKS FEYGQHTVTL ETGVIARQAD AAVLASMGDT TVLVTVVGKK VADLSRDFFP LTVNYQEKTY AAGKIPGGFF KREGRPSEDE TLIARLIDRP IRPLFPNGFK NEVQVIITVV SVDPQIEPDI ISMIGTSAAL AISGIPFSGP LGAARVGYIN GEYLLNPTVD QLATSSLNLV VAGTKAAVLM VESEAKALAE EIMLGAVTYG HDQQQVVVDA IAEFKAEAGK PTWDWTAPVQ DQALVAKIKE LAEAGMTDAY QIEVKQDRYV QVGVVKAAAK AALVAENPDV DTREVDNLLG SLEKNVVRSR IIAGKPRIDG REPDMIRALN VLAGVLPRTH GSSLFTRGET QALVTCTLGT ERDAQKIDSI MGERTNRFML HYNFPPYSVG ETGMVGSPKR REIGHGKLAW RGMNAVMPTA EEFPYSIRVV SEITESNGSS SMASVCGTSL ALMDAGVPIK TSVAGIAMGL VKEGDDFVVL SDILGDEDHL GDMDFKVAGT RDGITALQMD IKIEGITKEI MDIALQQAYG ARVHILNVMD QAIGTHRGDI SAHAPRITTI KINPEKIRDV IGKGGAVIRA LTEETGTTIE LDDDGTVKIA SSNGEATKEA IRRIEEITAE VEVGRVYNGK VIRIVDFGAF INILPGKDGL VHISQISDER VANVSDHLEM NQDVKVKVME VDRQGRVRLS IKEAQEKVAA E
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