Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1018 |
Symbol | |
ID | 4016586 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 1161442 |
End bp | 1163478 |
Gene Length | 2037 bp |
Protein Length | 678 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637955010 |
Product | GGDEF domain-containing protein |
Protein accession | YP_562029 |
Protein GI | 91792378 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00123246 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCAC GCTTTAAATC GCTAACGTGG AAACAGACTA ATCTCGTTGT GTTCACTGCG CTGTTTTTCG CCATCGCCAT CTTCTTTGTT GAAGTCGCGT TGGTAGGCAT AGACACAAAG CATCAATTAG AGAAAGAGCA GACTGAGCTG CTAGATTCTG TGGAGCAGAC TGCAGCAAAC TCAGTGTGGG CACTGGATGA TAAGCTTGCA GAGCAGACCT TAAAAGGGAT CATGAAAGTC GACAATATCA GCTCGGCGAG CATCACTCTC GATGACAATT CACTGTTTGT CACCGTCGCC AACAACCAAG AATCAGTTCA AGATTACCAT GTCGCATTAA GTGAATTTCT GTTTGGACAC TTGGAACAAG CGTCGCGCCC CTTGTATCGT CCCTTTTATT TTGAAGCCAA TAAAGAGCTG CAACTCATTG GCACGTTAAC CATTATTTAT GATACCCATT CTTTAACCAA TAATCTTTTT GGTCAGCTTA AATTTAGCTT TATCGCCACC TTAGCTCGAG CTCTTTTACT CACCTTAGTG CTTTCCTTGG TTTTCCATCG ATTTCTGACC CAGCCTATCG CTAAAATTAG CGAGGCCATA GATAAGATTG ACCCAGATAA TCCCGATGAA AACTTATTGC CAGCATCTAT TGCCCATAAA GACGATGAAC TGGGACTGGT TACCAGTAAA TTTAATCAAA TTTTACTGCA ATTTAGCCAA GCTCAGAACA AACTTAGAAA AATGGCCACC AGAGATCCCC TAACCGGTTT GCCCAATCGC GCCCTTTTGC TAGAAACGCT CAGCGTCACC ATACAAAGAT CGCGAGTGCA CAAGCGCAGT TTTGCTATTT TCTTCATCGA TTTAGACAGG TTCAAAAACG TCAATGACTC CTTAGGCCAT ACCATAGGCG ATCAATTCCT TGCACGTATC GCGCGTATTT TGGAGCGGGG CATAGGCGAC AAAGGCAGCG TGGCACGTTT GGGTGGCGAT GAGTTTGTGA TCTTGGCCGA TGAAATCCAG ACTCCATCAC AGGCCGCTGA TTTCGTAGGT AAATTATTAT CACAACTCAA TACGCCTATC CAACTTAATG AGCATTCTAT TCACCCTGCC GCCTCTATCG GTATCTCCAT TTACCCCGAT GATTGTGCCA GTGCAGAAGA TCTTATTCGC CATGCCGATA TTGCCATGTA CAGCGCCAAA GCGGCGGGTT CCAATCAATG GGCCTTCTTT AAACAGCAGA TGACAGAAAG AGCGGCAGTG CGTTTGCGAA CTGAAGCTTC GTTACATGAC GCCCTTAAAA ATAATGAATT TGTACTGTAT TTTCAGCCTA AGTTTGATTT GAAAACCAAT AAGGTTGTCA GCTGTGAAGC CTTGATCCGT TGGCAACAGG ATGGCCGTTT AATCAGCCCT ATGTCATTTA TTCCGGTGGC CGAAGAAACG GGGATCATAG TGCCCATCGG GCGCTGGGTT ATAGAGCAGA GCTGTAAAGT ATTGCGAGAT TGGCAACGAA AATATAACTA TGTCATCCCC ATTGCGGTCA ATGTGGCATC ACAGCAATTT GCCGATGCGA GCCTAGTACC TGATATTAAG CAATTAGCAC TCAGGTATCA GATCCGCCCA GAACAACTAG AAATAGAGAT TACCGAAACG TCATTGATGA ACGACATTGA GCAGGCCATC GCAAAACTGG AGCAACTCAA ATCAGCGGGT TTTAGAATTG CCGTGGATGA TTTTGGTACA GGCTACTCAT CCTTATCTTA TTTACGACAC TTGCCTATCA CAACCATGAA GATTGACCGT TGCTTCGTCA CAGACCTGCC TCATGACAGT GCTATTGCCT CAACTATCTT GATGCTAGGC CAGCAGCTCA ATCTGGAAAT CGTTGCCGAA GGCATAGAAA ATGAAGAGCA GCTCAGTTGG CTTAACGATC ATAATTGCCC AATAGGGCAA GGATTTTTCT TTAGCCAGCC GCTGCCATTA GATGAATTTG AAACTAAGTA TCTGGCGGGG CAAACCGCTG AAATCGTTAC GCTTTAA
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Protein sequence | MTARFKSLTW KQTNLVVFTA LFFAIAIFFV EVALVGIDTK HQLEKEQTEL LDSVEQTAAN SVWALDDKLA EQTLKGIMKV DNISSASITL DDNSLFVTVA NNQESVQDYH VALSEFLFGH LEQASRPLYR PFYFEANKEL QLIGTLTIIY DTHSLTNNLF GQLKFSFIAT LARALLLTLV LSLVFHRFLT QPIAKISEAI DKIDPDNPDE NLLPASIAHK DDELGLVTSK FNQILLQFSQ AQNKLRKMAT RDPLTGLPNR ALLLETLSVT IQRSRVHKRS FAIFFIDLDR FKNVNDSLGH TIGDQFLARI ARILERGIGD KGSVARLGGD EFVILADEIQ TPSQAADFVG KLLSQLNTPI QLNEHSIHPA ASIGISIYPD DCASAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV RLRTEASLHD ALKNNEFVLY FQPKFDLKTN KVVSCEALIR WQQDGRLISP MSFIPVAEET GIIVPIGRWV IEQSCKVLRD WQRKYNYVIP IAVNVASQQF ADASLVPDIK QLALRYQIRP EQLEIEITET SLMNDIEQAI AKLEQLKSAG FRIAVDDFGT GYSSLSYLRH LPITTMKIDR CFVTDLPHDS AIASTILMLG QQLNLEIVAE GIENEEQLSW LNDHNCPIGQ GFFFSQPLPL DEFETKYLAG QTAEIVTL
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