| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1009 |
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| Symbol | truB |
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| ID | 4016576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1149757 |
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| End bp | 1150710 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955001 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_562020 |
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| Protein GI | 91792369 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGTC GCTCCAAAGG TCGCCAAATC GACGGTATAG TCTTACTCGA TAAAGACACG
GGCATGAGTT CAAACTATGC ACTGCAACGA GTAAAACGTT TTTTTAACGC CAATAAAGCC
GGCCATACAG GGGCGCTCGA TCCATTAGCG ACAGGTATGC TGCCTATCTG TTTAGGCGAA
GCCACCAAGT TCTCTCAGCA TCTTTTAGAT GCCGACAAGC GTTACCTAGT GACGGCGAAA
CTTGGGGTGC GTACTGACAC CAGCGATTCC GACGGTGAAG TGGTGCAAAC CCGGGACATT
AATTTTACTC AGGCACAGCT TGAAACGGCG CTTGAGCATT TCCGTGGTGA TACCATGCAA
GTGCCTTCGA TGTTCTCAGC CCTTAAACAT CAGGGTCAGC CTTTGTACAA GTATGCCCGT
GAAGGCATAG AAGTCCCAAG GGAAGCGCGT CCCATTACTG TATTTGAGCT TAATTTTATT
AAGCTTGAAG GGGATGAGTT AACCTTAGAT ATTCATTGCT CTAAGGGCAC TTATATTCGC
ACCATCACCG ATGATTTAGG TGAGATGCTA GGTTGTGGTG CTCACGTTAT CATGCTGCGT
CGCACCCAAG TGGCTGACTA TCCTTATGAT AAAATGGTGA GCCTTGCAGA TCTTGAAGCC
TTGGTAACTC AAGCGCAGCA GCAGGAATTG GCCGTAGGCG AGTTACTCGA CCCCTTGCTA
TTGCCTATGG ATACCGCGGT GGCTAATTTC CCTGAGATTA ACCTGCCAGA ATCCATGCTT
TATTACGTGA TGCAAGGTCA AGCTGTGCAG GCGTCTGGCC TTAAAATTGA CGTATTAGTG
CGTATCACTA TTGGTGAACA GCGTAAGTTT GTGGGCATTG GGATAATGAA TGACGATGGT
TTGCTTGCGC CTAAGCGCTT GATTGTTATT CCAGCGGAAG AATCACCAGA GTAA
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| Protein sequence | MARRSKGRQI DGIVLLDKDT GMSSNYALQR VKRFFNANKA GHTGALDPLA TGMLPICLGE
ATKFSQHLLD ADKRYLVTAK LGVRTDTSDS DGEVVQTRDI NFTQAQLETA LEHFRGDTMQ
VPSMFSALKH QGQPLYKYAR EGIEVPREAR PITVFELNFI KLEGDELTLD IHCSKGTYIR
TITDDLGEML GCGAHVIMLR RTQVADYPYD KMVSLADLEA LVTQAQQQEL AVGELLDPLL
LPMDTAVANF PEINLPESML YYVMQGQAVQ ASGLKIDVLV RITIGEQRKF VGIGIMNDDG
LLAPKRLIVI PAEESPE
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