| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0996 |
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| Symbol | carB |
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| ID | 4017593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1133346 |
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| End bp | 1136573 |
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| Gene Length | 3228 bp |
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| Protein Length | 1075 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954986 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_562007 |
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| Protein GI | 91792356 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.846706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACCGATAT AAAAAGTATT CTTATCCTAG GGGCTGGTCC AATCGTGATT
GGACAAGCAT GTGAGTTTGA TTATTCAGGT GCTCAAGCCT GTAAAGCGCT GCGTGAAGAA
GGCTATCGCG TCATTCTGGT GAATTCAAAT CCAGCCACCA TAATGACAGA TCCAGAAATG
GCCGATGCAA CCTACATCGA GCCCATTCAC TGGGAAGTAG TGCGTAACAT TATCGCCAAA
GAACGTCCCG ATGCGATATT ACCCACCATG GGCGGCCAAA CCGCACTTAA CTGCGCCTTG
CAGCTTGAAG CCAAAGGGGT GTTAAAAGAG TTTAACGTCG AAATGATTGG CGCTACCGCC
GATGCTATCG ACAAGGCTGA AGATAGAAGC CGCTTCGACA AAGCCATGAA GGCCATCGGC
CTTGATTGTC CTCGCGCAGG TATCGCCCAT AATATGGATG AAGCTTATGG CGTATTGGAC
ATGGTGGGCT TCCCTTGTAT TATCCGCCCT TCATTTACCA TGGGCGGCAG TGGCGGCGGT
ATCGCCTATA ACAAGGAAGA GTTCGAAGAG ATTTGTTCTC AAGGCTTAGA CTTGTCACCG
ACCAATGAAC TGCTTATCGA TGAGTCACTC ATAGGTTGGA AAGAATATGA AATGGAAGTG
GTGCGCGACA AAAATGATAA CTGCATCATA GTCTGCGCCA TTGAAAACTT CGACCCTATG
GGCGTGCACA CAGGTGATTC AATCACAGTG GCACCAGCGC AAACCTTAAC CGACAAAGAA
TACCAGCTGA TGCGTAATGC CTCACTTGCG GTATTGCGTG AAATCGGTGT GGAAACTGGC
GGTTCTAACG TGCAGTTCGG TATTTGCCCT GAAACTGGCC GCATGGTCAT CATCGAGATG
AACCCTAGGG TGTCGCGCTC ATCAGCGCTA GCGTCAAAAG CCACGGGTTT CCCTATCGCC
AAAGTGGCCG CCAAATTGGC AGTGGGCTTT ACCTTAGATG AATTGATGAA TGACATCACA
GGTGGTCGTA CTCCAGCGTC ATTTGAGCCT GCCATCGATT ATGTGGTCAC TAAAATTCCT
CGCTTTAACT TTGAAAAATT TGCCGGTGCT AACGACAGAT TAACTACTCA GATGAAATCT
GTGGGTGAAG TGATGGCCAT TGGCCGTACT TTCCAAGAGT CATTGCAAAA AGCCCTTCGT
GGCCTTGAAG TGTCTCGTAA TGGCTTCGAT CCTATCGTGG ACTTGGCTTC AACGGATGCC
ATGACACGTA TTCGCCATGA GCTAAAAGAG CCAGGCGCCG ATCGTATTTG GTATATAGCC
GATGCGTTCA GAGCCGGATT ATCCAGCGAT GAAGTCTTTA CTCTGACCAA TATCGACCCT
TGGTTTCTAG TGCAAATTGA AGAGCTGATT AAACTTGAGT CAGAAGTCGC AGATGCTGGT
ATGTCAGGTT TAAATGCGGA TTTTCTGCGT AAATTGAAGC GTAAAGGTTT TGCTGACTCG
CGTCTTGCCG ATGTACTAGG CGTGAGTGAA TCTGAAGTGC GTAAACAGCG CCATAAGTTC
AAGCTTCACC CTGTGTACAA GCGCGTCGAT ACTTGTGCTG CTGAATTTGC AACAGATACC
GCCTACATGT ACTCGACCTA TGAAGATGAG TGTGAGGCAC TGCCTTCAAA TCGTGACAAA
ATCATGATTT TAGGTGGCGG TCCAAACCGT ATTGGCCAGG GTATCGAATT CGATTATTGC
TGTGTGCACG CGGCGCTTGC CCTGCGTGAA GACGGTTATG AAACCATTAT GGTTAACTGT
AACCCTGAAA CCGTATCTAC GGATTATGAC ACTTCGGACA GACTCTATTT TGAACCTGTG
ACATTAGAAG ATGTGCTTGA AATCGTCCGC ATCGAGAAGC CAAAAGGCGT TATCGTGCAG
TACGGTGGTC AAACGCCACT TAAATTAGCT CGCGAGTTAG AAGCTGCAGG TGTGCCGATT
ATTGGCACTA GCCCAGATGC TATTGATAGG GCCGAAGACA GAGAGCGTTT CCAGCAAGCC
ATTCAACGTC TTAACATGAA GCAGCCAGAA AATGCGACCG TGACTACGGT TGAAAGTGCG
GTAATTGAAG GCGAAAAAAT TGGTTACCCG TTAGTGGTAC GCCCATCATA CGTACTTGGC
GGCCGTGCCA TGGAAATCGT CTACGATAAA CAAGATTTAT TGCGCTATTT CAACGAGGCT
GTGAGCGTGT CTAACGCGTC ACCTGTGTTA TTGGATCACT TCTTAGACGA TGCCATCGAA
GTGGATATCG ACGCCATTTG TGATGGAGAA ACCGTAGTAG TTGGCGCCAT TATGGAGCAT
ATCGAGCAAG CGGGCGTTCA CTCGGGGGAT TCAGGTTGTT CACTGCCACC TTATACTTTG
AGCCAAGCTA TCCAAGATGA GATGCGAGTA CAAGTCTCTA AATTGGCGTT TGAGCTTGGT
GTCGTGGGCT TAATGAACGT GCAATTTGCG GTGAAAGATA ACGAAATCTA CATGATTGAA
GTTAATCCCC GCGCTGCCCG TACTGTGCCT TTCGTTTCAA AAGCGACTGG CGTGCCATTA
GCTAAGATTG CCGCGCGAGT CATGGCGGGA CAAAGTCTTA AGCAGCAAGG ATTTACCGCA
GAAGTCATCC CACCGTTTTA CTCAGTTAAA GAAGTGGTAT TGCCGTTTAA CAAGTTCCCT
GGTGTCGATC CACTGTTAGG GCCAGAAATG CGCTCAACGG GTGAAGTCAT GGGCGTGGGT
GATACCTTTG CTGAAGCTTA TGCCAAGGCG CAGCTTGGGG CGACGTCTGA AGTGCCAAAA
TCTGGACGCG CCTTACTTTC TGTGCGTAAC AGCGATAAGA AACGGGTTGC AGATTTAGCG
GCTAAGTTAA TTGAACTTGG TTATCAAATC GATGCAACCC ACGGCACTGC GATTGTGCTT
GGTGAAGCAG GAATTAACCC ACGCTTAGTG AATAAGGTCC ATGAAGGTCG TCCGCACATT
CTTGATAGGA TCAAAAATGG CGAATATACC TACATAGTGA ACACCACCGA AGGGCGTCAA
GCCATTGAGG ATTCACGCCA AATTCGCCGC GGCGCACTGC GTTACAAGGT GAATTACACC
ACCACACTGA ATGCGGCATT TGCAACTTGC ATGGCGCACT CAGCCGATGA CAGAAGCAAT
GTGACGTCTT TGCAAGAGCT TCATCAAAGG GTGTTGAATA AAGCTTAA
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| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL QLEAKGVLKE FNVEMIGATA
DAIDKAEDRS RFDKAMKAIG LDCPRAGIAH NMDEAYGVLD MVGFPCIIRP SFTMGGSGGG
IAYNKEEFEE ICSQGLDLSP TNELLIDESL IGWKEYEMEV VRDKNDNCII VCAIENFDPM
GVHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGICP ETGRMVIIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGF TLDELMNDIT GGRTPASFEP AIDYVVTKIP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVSRNGFD PIVDLASTDA
MTRIRHELKE PGADRIWYIA DAFRAGLSSD EVFTLTNIDP WFLVQIEELI KLESEVADAG
MSGLNADFLR KLKRKGFADS RLADVLGVSE SEVRKQRHKF KLHPVYKRVD TCAAEFATDT
AYMYSTYEDE CEALPSNRDK IMILGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RELEAAGVPI
IGTSPDAIDR AEDRERFQQA IQRLNMKQPE NATVTTVESA VIEGEKIGYP LVVRPSYVLG
GRAMEIVYDK QDLLRYFNEA VSVSNASPVL LDHFLDDAIE VDIDAICDGE TVVVGAIMEH
IEQAGVHSGD SGCSLPPYTL SQAIQDEMRV QVSKLAFELG VVGLMNVQFA VKDNEIYMIE
VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLKQQGFTA EVIPPFYSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG DTFAEAYAKA QLGATSEVPK SGRALLSVRN SDKKRVADLA
AKLIELGYQI DATHGTAIVL GEAGINPRLV NKVHEGRPHI LDRIKNGEYT YIVNTTEGRQ
AIEDSRQIRR GALRYKVNYT TTLNAAFATC MAHSADDRSN VTSLQELHQR VLNKA
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