| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0951 |
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| Symbol | |
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| ID | 4016553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1088024 |
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| End bp | 1090108 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637954941 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561962 |
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| Protein GI | 91792311 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.75473 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGCC GGACAATGAA GATGAAGACG ATGCCCAGCT TACACAAATG GCCGGTTAAC
ATCTTTAGTT GGTTATGTTG CAGCCTTATT CTTGGATTGG GCTGCTGTTT GTTACTTGCA
AATCAGGCTA TTGCTAACGT TTTACCCGCT ACTCAAACTC CAGCTCAGTT AATTCATACA
GAATTAACCC AGGATGCGCC CAGCATCAGC ATCCTCGAAG CAAATCAAGC AACTATTGAA
GAAATTATCG AAGAAACAAG CCAAGAAACA GCTGCAGCTG AGATTGCTTT GTTATTTGAT
GAGGCGCAGC GTTACCGTGG CACAGACGGT GCCAAATCTA GCGCCATTCT TCAGCGATTG
GAGAAGCTAA GACACAATCT CAGTCAAGAG CAGGCCTACT ATTTAGATTA TCTGCAGGCC
TATCAGCAAG GTATTTTGGG AAAGCATGAC ATAGCTCTAA ATACACTGCT GAATGTGTTT
AATAACACTC AAAGTACAGA GCTTAAGTTT CAGTCTGGGC ACACCATTTT CAATGTGCTG
GCCATATCTA GGCGCTTTGT CGAAGCGCTG TCTTACTATA ATCAGACCAT GGCCTTATAT
TCACAAGTTA GCGATGGCGG CTTGAGAGCG ACATCATTGT TTGCTGGCAT GATGTTGTTT
AATGAATTAG GCGACTATGA AAGAGTCATT TCAATAAGGC AGCACTCAGA TTTGGCAACC
CTCTCAGAGG GCCTGCGCTG TAAGGCGGAT GCGTTCCTTA TAAGAGCCGA ATCTAATCTT
GGCCCCTCAG ATAAGGTATT GCCATTTGAG CAAGGTTTAG CTCTTTGCCG CTCAGCAGGG
CAACCTTTAT ATGAATCTTT TATTAGGCTG TATTATGTGC GTTTCTTATT GGCTAACAGT
CAATACATGG AGGCCAAAAC TGAGCTTGAA GCCCATCTTG CCACCAGTCT GTCGACCCAA
TATAAGCTCA TTATTCAAGA ATATTATTAT CTGATGGCCA AGACCTATTG GTTGTTAGGC
AATGAAGCTG AGGCGACGCT ATTTGCAGAG CGTGCCCTTG AGACTAGCGT CAGCGAACAG
TATTCCTTAC CACTGACTTT GAGCCTGGAG CTTAGCTATC AGATGGCCAA GCAGCGGGGT
GACTTCGAAC TGGCACTCCA GTATGCAGAG CAATATGCCC AAGCGGATAA AGGTTATTTA
AATCAATTGC GTGTCAAGGC GATGGCCCTA GAAATGAATA AGGCCGAGAT GCTAGAACAA
CAACAGCGCA TTGAAATACT CAAACGAGAA AATCAATTGC TGACCTTGGC GCAAGCGCTT
GAGCGCAAAG AGAATGTCAA TGTGCAGTTA CTGATTGTCG TGTTGCTGCT GTGTTTGCTG
TCAGTCTGTA TTTGGGCTTA TCGTTCCAAA CGCATACAAA GCGAACTAGC CCGTCTAGCA
CAGGTGGATG AACTCACTCA AGTCTTTAAT CGCCGTCAAT TGGTGCTGCT TGGCGGACAA
GTGTTGGCAT TGGCTGAGCG TAATAAAACC AAGGTTAGCG TTATCATGGT GGACTTAGAT
TTTTTTAAAT CCATCAATGA TAGATTTGGT CACAATGTGG GTGATTGGGC CTTGAGGCGG
GTGGCAGAGA CCTTGAACGC TTTGGGCCGC AAGAGCGACG TCTTTGGCCG TTTAGGCGGG
GAGGAATTTG CCTTTGTGTT AAGTGATTGT GCTCTAGAAC AAGCCTTAGA TTTTGCAGAA
TTATGCCGAA ATGAAATTGC CACCATAGAT GTGTCTGACA GTTTATTTCC AGGGGCCTTG
AGTCTCACCG CAAGTTTTGG TGTCACAGAA ACAGGCTTAT CAGGCTATGA TTTAGAAGGC
TTACTTTCTG ATGCCGATCA AGCCCTCTAT CAAGCCAAAG ACAGTCAACG AAATTGTGTG
GTGAAATTTG AAGCACATCC CATTACTAAT GAAAGTGATG TTGCAACCGA TGCAGCGAGA
GATGAGGTAA GGGAAGGCGT ATCGGATGCA ACAACCGATG GCACAACATC TGTTAAAATC
GGTGAAGCCA CAGATGCGAC AACAGGAAAA ACAGTGAATG TTTAA
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| Protein sequence | MKRRTMKMKT MPSLHKWPVN IFSWLCCSLI LGLGCCLLLA NQAIANVLPA TQTPAQLIHT
ELTQDAPSIS ILEANQATIE EIIEETSQET AAAEIALLFD EAQRYRGTDG AKSSAILQRL
EKLRHNLSQE QAYYLDYLQA YQQGILGKHD IALNTLLNVF NNTQSTELKF QSGHTIFNVL
AISRRFVEAL SYYNQTMALY SQVSDGGLRA TSLFAGMMLF NELGDYERVI SIRQHSDLAT
LSEGLRCKAD AFLIRAESNL GPSDKVLPFE QGLALCRSAG QPLYESFIRL YYVRFLLANS
QYMEAKTELE AHLATSLSTQ YKLIIQEYYY LMAKTYWLLG NEAEATLFAE RALETSVSEQ
YSLPLTLSLE LSYQMAKQRG DFELALQYAE QYAQADKGYL NQLRVKAMAL EMNKAEMLEQ
QQRIEILKRE NQLLTLAQAL ERKENVNVQL LIVVLLLCLL SVCIWAYRSK RIQSELARLA
QVDELTQVFN RRQLVLLGGQ VLALAERNKT KVSVIMVDLD FFKSINDRFG HNVGDWALRR
VAETLNALGR KSDVFGRLGG EEFAFVLSDC ALEQALDFAE LCRNEIATID VSDSLFPGAL
SLTASFGVTE TGLSGYDLEG LLSDADQALY QAKDSQRNCV VKFEAHPITN ESDVATDAAR
DEVREGVSDA TTDGTTSVKI GEATDATTGK TVNV
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