Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0945 |
Symbol | |
ID | 4016890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 1081251 |
End bp | 1082855 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637954935 |
Product | amino acid/peptide transporter |
Protein accession | YP_561956 |
Protein GI | 91792305 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.985856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCACCA CACTATCAGA TGCTGAACGC CACGCCAACA TGCAGCAGGA CACCTTTTTA GGCCACCCCA AGGGGCTGTT CGTGTGTTTT TTCACCGAGA TGTGGGAGCG TTTTTCCTTC TACGGCATGA AAGCCCTGCT GTTTTTATAC CTGATCAAAT ACCACCTGTT TACCGATGAA CAAGGCTACA ACCTTATCGG GGCTTATGGT GCCCTCGTCT ATGCCGTGCC TGTGGTGGGT GGTTTATTAG CCGACCGCTA TTTAGGCATG CGCAAGGCGG TCATATTCGG CGCCTGTTTG CTGGTGCTCG GCCACCTAGG CATGGCATTT GAAGGCCACC AAGCGGCCCG AGTCGCTGGG GAAGTGGTGC GTGATGAAGG TGCCTTGCAA GTATTTTACT TCTCTTTGGC GTTAATTATC ATGGGGGTGG GCTTCTTAAA ACCCAATATA TCCACCATAG TCGGTCAACT CTACCCGCCG CAGGATCCCA AACGTGACTC GGGCTTTACC CTCTTCTATG CTGGAATAAA CTTAGGGGCC ACCCTAGCGC CGCTTCTCTG TGCTTACCTT GGTGAAACCT ACGGCTGGAA ATATGGCTTT GGTCTAGCAG GCATAGGCAT GCTGGCAGGG CTTATTGTGT TTATCCGCGG GCAAAAATAC TTGTATGGCG TCGCCGAAGC TAATGACCCT GAAAAGCTTG CCAAAAAGCG CTTAGGCATC AGCACAGAAG TCTGGATATA CCTAGCCGCC AGCTTAAGTG TGCTGCTTAT TTGGGGGCTT GTTCAAACCC ACTCATTGGT GTTACAACTC AGTGAGATGT TACCCAGCGC CAGCCCAGTG CTCTGGACCT TGCACGGCAT ATCATTAGTG CTCGCCATTG GCATAGGCTG GTTTATGCTA AAGCATTGCA ACAAGATTGA GCGCCAGCAG ATGACGGCCT TATTGGTGTT TATTGTGGCG GGGTTAATCT TCTTCGGCCT CTACGAGCAG ACCTACGGCT CTTGGGTCGC CTTCTCCGAT CGCGTCATGG ACAGAAACAT GCTCGGCTTA GAATGGAGCG CCGGCCAGCT CACCTTCCTC GGCGCCTTCT TCGTCATCTC TCTATCGCCC TTGTTTGCTT GGCTGTGGCC AAAGCTTGCA AGTAAAGGCT TAGATCCCAG CAAACCAATA AAAGTTGCCT TAGGGATCTT ATTCGCCGGT TTGTCATTCC TAGTGTTAGT GCTAGGCATT CAAACGCCGC TAGAAAGCGG TTTAGTCAGC ATCTGGTATC TAGTGCTCGC TTATTTAGTG CTGGAAATTG GTGAATTGTT ATTGTCGCCC ATAGGCCTGT CTGCGGTCAC CGAATTATCG GTCAAACGCG TGGTGAGCCT GATGATGGGC GCTTGGTTCC TCGGCACCTC ATACTCTGAG ATTTTAGCCG CTGAGCTGAG TAAACTTGCC GCCATTGACA CCCATGGCGG CGTGATAAGC GATATCCCAA GTGCCATGCA GCTCTATGAA GAACTGTTTA TCTTCTCGGC CCAGATAGGC ATAGCCATGG CAGTGGTCTT CTTCGCCATC AGCCCCTTGG TAAAAAAACT GATGCATCAG CAGGCTGCAG CTTAA
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Protein sequence | MPTTLSDAER HANMQQDTFL GHPKGLFVCF FTEMWERFSF YGMKALLFLY LIKYHLFTDE QGYNLIGAYG ALVYAVPVVG GLLADRYLGM RKAVIFGACL LVLGHLGMAF EGHQAARVAG EVVRDEGALQ VFYFSLALII MGVGFLKPNI STIVGQLYPP QDPKRDSGFT LFYAGINLGA TLAPLLCAYL GETYGWKYGF GLAGIGMLAG LIVFIRGQKY LYGVAEANDP EKLAKKRLGI STEVWIYLAA SLSVLLIWGL VQTHSLVLQL SEMLPSASPV LWTLHGISLV LAIGIGWFML KHCNKIERQQ MTALLVFIVA GLIFFGLYEQ TYGSWVAFSD RVMDRNMLGL EWSAGQLTFL GAFFVISLSP LFAWLWPKLA SKGLDPSKPI KVALGILFAG LSFLVLVLGI QTPLESGLVS IWYLVLAYLV LEIGELLLSP IGLSAVTELS VKRVVSLMMG AWFLGTSYSE ILAAELSKLA AIDTHGGVIS DIPSAMQLYE ELFIFSAQIG IAMAVVFFAI SPLVKKLMHQ QAAA
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