Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0901 |
Symbol | |
ID | 4016710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1026943 |
End bp | 1029150 |
Gene Length | 2208 bp |
Protein Length | 735 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637954891 |
Product | TonB-dependent receptor |
Protein accession | YP_561912 |
Protein GI | 91792261 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATAAGAC GTATCCTTCA ACTAGTCTCG CCTCAAGTCT CGGGGCGAGT GCTCAGCTTG GTACTCGCCA GCTTGGTACT CGCTTTAGTG CCACAGCACT CTTTGGCAAC TGACGCTAAG ACTGACGCAA GTGCTGACCT TAATGCTGGC CTTAAGACAG ACGCTAACGC AAAGGTTAAG CAAGCTAGCA GGCCTGCTTC AGAAACAAAA CACACAGCAC AGACTATCAA ACCACGCCCT CTTGAAGTGT TAACCATCAC CGCAAGCCGC CAGGCTATGG CAATCAAACA CAATAGCACT AGCATCAGTG TGGTCGATGA ACACCAACTA CAAGCTATCG GTCACCAACA CATCAATCAA ACCCTAGCTC GGGTTCCCGG CAGTTGGATA AGCAGGGGAA ATGGTCAAGA ACATTTAAGC GCGATACGAT CGCCAGTGTT AACTGGGGCA GGGGCTTGTG GGGCATTCTT CATGGCAGAA GATGGCATTA GTCTAAGAGC TGCGGGCTTT TGTAACGTCA ATCAGCTGTT TGATACTAAT ACCGAGCAAG CGAGCCGTAT CGAAGTCATC CGAGGGCCTG GCAGCGTGCT CTATGGGGCC AATGCCGTGC ACGGCACCAT CAATATTATT AGCCCGGATA TGTTTGTGCC AAGGGATGAA TATTTAAGCC AGGAAATTGG CCCAGACAAT TACTGGCGCA GCAGTGTCAG CACTCAAAGT GTCAAGAATA ACCATGCCTT AGGAGTGTAT GCTAATGCGA GCCATGATGG TGGCTACCAA GAGGGCAGTG GCTATGAACA GCAAAAGCTT AATTTGGTTC ATCAGTATAT GCAGGATGCG TTCTCGGTAA AAAGCATGTT GAGCACCAGC CACATTAACC AACAAACCGC CGGGTTTATT CGCGGTAAAT TCGCCTATAA AGATGAGGCG TTAAAGCGTC AAAACTCCAA TCCAGAGGCG TTTCGCCATA GCCAATCTTG GCGTGCCTAT AGCCGGCTTA GCTGGGAAAT GCCGGGTAGC GAGCAAGATA GCGAACTGAA CATTACCCCT TATCTGCGTT ATAACAAGAT GACCTTCCTG CAGCATTATT TCCCTTGGCA GCCAGAGGAA GACAACAGTC ATCGCAGTAT GGGCATCAAG AGTGTTTACT CGCAACACCA AGGCGAGTTC AGCTGGCATG GAGGGCTAGA TCTGGAATTT ACCCAAGGTC AGCTACAAGA AACTCAAAAA GGGGCGTTCT CTGCGAGTAT TCCCCAAGGG GCACACTATG ATTATCGCGT CGATAGTCGC AGCATGTCTC CTTTTGTCGA TGTCGACTGG TTTGCCACTC AAGTCCTCAC AGTCAACCTA GGGGTTCGCT ATGATCATAT TGTTTACGAC TATGATAACC GCTTAAGCTC AGGCAGTGCT TGTGACTTAG GGGTTTCAAA CTGTCGCTTC TACCGCCCCG AAGATGAAAC TCGCAATTTT GGCCACTGGT CGCCCCGTTT AGGCTTGGTA TATCAAGTTA ATGAGCAATT GAACCTGTAT GGGGAATTAG CCCAAGGCTT TCGAGCCCCC CATACTAGTG AACTGTACCG ATTACAGGCA GGGCAAATCA GTGCCGATTT GGATACTGAG CAATTAACCA GCATTCAATT TGGCCTCAGA GGCTATTTAG ACAGTTTTTC CTATGAGCTT AGTCTCTACC AAATGCATAA AAGTCATTTC ATTTTTCAAG ATAGCCAGAG TCAATATGTC GGCAACGGGG AAACTCAGCA TCTAGGGTTT GAGTTTTCAC TCTCTTACGC ATTTAACGAC CAATGGATGC TCTCATTAGG GGGCAGTGTT GCCGAACATG AATACGCCAA TGACCTGCGG CTAATTGATG AGAGCATTGA GGGTAATCAG ATTGATACCG CGCCGAAGGA AATGCTCAAT ACCCGTGTAA GTTGGACGCC CAGCACCAAT CTGCAACTGG AGTTAGAATG GCAGCACTTG GGCGAGTATT ACCTAAACCC AGAGAATAGC GCCAGTTATC CCGGTCATGA CCTGCTTCAT TTACGCGGCC AAGTTCAAAT AAGCGATAAG CTTGCGCTGT CACTGCGACT GAACAACGTG TTAGATAAGG ATTATGCCGA GCGGGCCGAC TTTGCCTTTG GCTCCTACCG TTACTTCGTT GGGCAGCCTA GATCAGTTTT CCTCACCCTG CGCTATCAAA TGGACTAA
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Protein sequence | MIRRILQLVS PQVSGRVLSL VLASLVLALV PQHSLATDAK TDASADLNAG LKTDANAKVK QASRPASETK HTAQTIKPRP LEVLTITASR QAMAIKHNST SISVVDEHQL QAIGHQHINQ TLARVPGSWI SRGNGQEHLS AIRSPVLTGA GACGAFFMAE DGISLRAAGF CNVNQLFDTN TEQASRIEVI RGPGSVLYGA NAVHGTINII SPDMFVPRDE YLSQEIGPDN YWRSSVSTQS VKNNHALGVY ANASHDGGYQ EGSGYEQQKL NLVHQYMQDA FSVKSMLSTS HINQQTAGFI RGKFAYKDEA LKRQNSNPEA FRHSQSWRAY SRLSWEMPGS EQDSELNITP YLRYNKMTFL QHYFPWQPEE DNSHRSMGIK SVYSQHQGEF SWHGGLDLEF TQGQLQETQK GAFSASIPQG AHYDYRVDSR SMSPFVDVDW FATQVLTVNL GVRYDHIVYD YDNRLSSGSA CDLGVSNCRF YRPEDETRNF GHWSPRLGLV YQVNEQLNLY GELAQGFRAP HTSELYRLQA GQISADLDTE QLTSIQFGLR GYLDSFSYEL SLYQMHKSHF IFQDSQSQYV GNGETQHLGF EFSLSYAFND QWMLSLGGSV AEHEYANDLR LIDESIEGNQ IDTAPKEMLN TRVSWTPSTN LQLELEWQHL GEYYLNPENS ASYPGHDLLH LRGQVQISDK LALSLRLNNV LDKDYAERAD FAFGSYRYFV GQPRSVFLTL RYQMD
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