| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0835 |
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| Symbol | |
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| ID | 4016799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 956295 |
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| End bp | 959249 |
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| Gene Length | 2955 bp |
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| Protein Length | 984 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637954826 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_561847 |
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| Protein GI | 91792196 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAGAC GCATAGGACT AAGACGCCTA AGACTAAGAC TGGCAGATTT GGAATATAAG
TTTATCATGA CCAAGCAAAC GCTTACCCAG CTAGAGCAAC ACGAACTCTT CTTAACCCGT
CATATCGGCC CAAATGCTGC TCAGCAGCAA GAAATGCTGA GTTTTGTCGG CGCAGAGTCC
TTAGACGATC TCACCGCACA AACTGTGCCG GGTGCCATTC GTCTACCTCA AGATCTCACC
ATAGGTGATT CTTGTGGTGA AGCCGAAGGC ATAGCCTATA TCCGCAACAT AGCCGACAAG
AACAAAGTCT TTAAGAGCTA TATCGGTATG GGTTATTACG GGGTGCAAGT GCCAAACGTC
ATCTTGCGTA ACGTGTTTGA AAACCCAGGT TGGTACACAG CTTATACCCC TTATCAGCCA
GAAATCGCTC AGGGCCGTTT AGAAGCTATT CTTAACTTCC AGCAGATGTC GATGGACTTA
ACCGGCCTAG ATCTTGCCTC GGCATCCTTA CTGGATGAAG CGAGCGCCGG CGCCGAAGCC
ATGGCGCTAG CAAAGCGTGT CTCTAAAGCC AAAAAAGCCA ACATCTTCTT CGTTGCCGAT
GACGTGTTCC CGCAGACCTT AGATGTGGTG CAAACCCGCG CCGAATGTTT CGGTTTTGAA
GTGGTGGTGG GGCCTGCCGC CGATGCCGTT AACTACGAGC TGTTTGGCGC CTTGTTCCAA
TACTCGAACC GTCATGGTCA AATCAGTGAT TTCACAGCGC TATTTAGCGA ACTTCGCGCT
AAAAACGTGG TAGTGACAGT GGCAGCAGAT TTGATGGCGT TAATGCTACT TAAATCACCA
GGCGCCATGG GCGCAGACGT GGTCTTCGGT AGTGCCCAGC GCTTTGGCGT ACCTATGGGG
TACGGCGGCC CACACGCGGC ATTCTTCGTG GCCCGTGATG AGCACAAGCG TTCTATGCCT
GGGCGCATTA TCGGTGTGTC TAAAGACACC CGTGGCAACA TGGCACTGCG CATGGCAATG
CAGACGCGCG AGCAACATAT TCGCCGCGAA AAAGCCAACT CAAACATTTG TACTGCGCAG
ATTCTATTAG CCAACATGGC CTCGTTCTAC GCCGTATTCC ATGGCCCACA AGGCCTTAAG
ACCATAGCGA CGCGCATCAA TCGTCTGGCA GATATTTTAG CTTTTGGCCT TAAAGCCAAG
GGCCTAAGCC TAGTGAACGA CGCTTGGTTT GATACCGTGT CGGTGAAAGG CGCAGACATT
GGCGCCATTC AAGCGCGCGC CATCGCAGCT GGCATTAACT TGCGCATCGA TGCCGATGGC
GTGTTTGGCA TAAGCCTTGA TGAAACCACA CTGCGAAGCG ATATCGCCGA TTTATTCGAT
GCCATTTTAG GCGCAGGCCA TGGCCTAGAT GTGGCGGCAA TTGATGCACA GCTTGTGGCG
GCGAACAGCA GCTCAATCCC AGCGGCATTA GTGCGAACAG ATGCCGTATT AACTCATCCA
ACCTTTAATC GCTACCAGAG CGAAACCGAG ATGATGCGTT ACATCAAGCG CCTTGAAAAC
AAAGATTTAG CCTTGAACCA TTCGATGATA TCACTGGGTT CATGCACCAT GAAGCTTAAC
GCTGCCGTAG AAATGCTGCC GGTAAGCTGG CCAGAATTTG CCAACATGCA CCCATTCTGC
CCGCTAGATC AAGCAGAAGG TTACACTCAG TTAATCAATG AACTGTCTGA ATACCTTGTG
AAAATCACAG GATACGATGC CGTGTGTATC CAGCCAAACT CGGGCGCGCA GGGCGAGTAC
GCAGGCCTTC TGGCCATTAA GAAATACCAT GAGTCTCGCG GCGATGCCCA TAGGGATATT
TGTTTAATCC CACAATCTGC TCACGGTACA AACCCAGCGT CGGCTCAGCT TGCTGGCATG
AAAGTCGTGG TAACCGCCTG TGATAAGCAA GGTAACGTAG ATTTAGACGA TTTGCGCGCT
AAGGCAAGCG AGCTTGCCGA TAGCCTGTCA TGCATCATGA TCACCTATCC TTCGACCCAC
GGCGTGTATG AAGAATCCAT CCGTGAAGTG TGTGACATAG TCCACCAATA CGGCGGTCAA
GTGTACTTAG ATGGCGCTAA CATGAATGCT CAGGTGGGCC TAACGTCACC TGGCTTTATC
GGCGCCGACG TATCGCATTT GAACCTACAC AAGACTTTTG CTATCCCGCA CGGCGGCGGT
GGTCCAGGCA TGGGCCCAAT CGGGGTGAAA TCTCATCTGG CGCCCTTTGT CGCCGGCCAC
ACTGTGGTAA AACCTGGCCG CGAAAGTGAC CATAACGGCG CAGTGTCGGC AGCGCCTTAC
GGCAGCGCCA GCATATTGCC CATCAGCTGG ATGTACATCA AGCTGCTAGG CACCAAAGGC
ATTAAGCAGT CGACTCAAAC CGCGCTATTA AACGCTAACT ATGTGATGAA GAAGCTGTCG
GCGCATTACC CAGTCTTGTT TACTGGCCGC AACGATCGCG TCGCTCACGA GTGTATTATC
GATTTGCGCC CACTCAAAGA AGCCTCAGGC GTCACCGAGA TGGATATTGC TAAGCGCCTT
AACGATTACG GCTTCCATGC GCCAACCATG AGTTTCCCTG TGGCAGGCAC CTTGATGATA
GAGCCAACCG AGTCTGAATC TAAGGTTGAA TTAGACAGAT TCATCGAGGC CATGGTGTCC
ATACGCGGCG AAATCGCCAA GGTGGAGTCT GGTGAGTGGC CAGTGGACAA CAACCCACTG
CACAATGCAC CGCATACCAT GGCGGACATT ATGGACCCAG AGTTTGATTC ACGTCCTTAC
AGCCGTGAAG TGGCGGTGTT CCCAAGTGCC GCGGTGAAAG CCAATAAGTT CTGGCCAACG
GTTAACCGTA TTGATGATGT ATATGGCGAT AGGAATCTGA TGTGTAGTTG CGTCCCTTTG
AGTGATTATG AATAA
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| Protein sequence | MPRRIGLRRL RLRLADLEYK FIMTKQTLTQ LEQHELFLTR HIGPNAAQQQ EMLSFVGAES
LDDLTAQTVP GAIRLPQDLT IGDSCGEAEG IAYIRNIADK NKVFKSYIGM GYYGVQVPNV
ILRNVFENPG WYTAYTPYQP EIAQGRLEAI LNFQQMSMDL TGLDLASASL LDEASAGAEA
MALAKRVSKA KKANIFFVAD DVFPQTLDVV QTRAECFGFE VVVGPAADAV NYELFGALFQ
YSNRHGQISD FTALFSELRA KNVVVTVAAD LMALMLLKSP GAMGADVVFG SAQRFGVPMG
YGGPHAAFFV ARDEHKRSMP GRIIGVSKDT RGNMALRMAM QTREQHIRRE KANSNICTAQ
ILLANMASFY AVFHGPQGLK TIATRINRLA DILAFGLKAK GLSLVNDAWF DTVSVKGADI
GAIQARAIAA GINLRIDADG VFGISLDETT LRSDIADLFD AILGAGHGLD VAAIDAQLVA
ANSSSIPAAL VRTDAVLTHP TFNRYQSETE MMRYIKRLEN KDLALNHSMI SLGSCTMKLN
AAVEMLPVSW PEFANMHPFC PLDQAEGYTQ LINELSEYLV KITGYDAVCI QPNSGAQGEY
AGLLAIKKYH ESRGDAHRDI CLIPQSAHGT NPASAQLAGM KVVVTACDKQ GNVDLDDLRA
KASELADSLS CIMITYPSTH GVYEESIREV CDIVHQYGGQ VYLDGANMNA QVGLTSPGFI
GADVSHLNLH KTFAIPHGGG GPGMGPIGVK SHLAPFVAGH TVVKPGRESD HNGAVSAAPY
GSASILPISW MYIKLLGTKG IKQSTQTALL NANYVMKKLS AHYPVLFTGR NDRVAHECII
DLRPLKEASG VTEMDIAKRL NDYGFHAPTM SFPVAGTLMI EPTESESKVE LDRFIEAMVS
IRGEIAKVES GEWPVDNNPL HNAPHTMADI MDPEFDSRPY SREVAVFPSA AVKANKFWPT
VNRIDDVYGD RNLMCSCVPL SDYE
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