| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0783 |
|---|
| Symbol | |
|---|
| ID | 4016733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 901648 |
|---|
| End bp | 902559 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637954768 |
|---|
| Product | LysR, substrate-binding |
|---|
| Protein accession | YP_561796 |
|---|
| Protein GI | 91792145 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGAA TTGATGCTAT GCGAGCATTT GTCTCAGTGG TGACAGAAGG TAGCTTTAGT
CATGGGGCGA GCCACTTGCA GTTATCCCCC CAATTGGTGA GTAAGTACGT GTCTCAGTTA
GAGGTGCGCC TGGGTGTGCG TTTACTCAAT CGCACCACAC GTAAAGTCAG TCTCACCGAA
GCGGGCACGG AGTATTTTCA ACATGCACAG CAGATATTAT TAAGCATAGA TGAAATGGAT
GCCCAGTTGG GCGGGTTACA GCAACAGCCT AAAGGCACAT TAAGGATCAG CGCACCGGTA
TCCTTCGCTT TGAAGCACCT GGGAAGGTTA GTCACCGATT TTCAAATAGC TCATCCTTTA
GTCAATGTGG ATTTACAACT CAATGATCGT AAAGTCGATA TTGTCGAAGA AGGTTTCGAT
GTCGCACTGC GCATAGGTCA GCTTAAAAGC TCATCACTGA TTGCTAAGCA TATCGCCCCC
ATACGTGTAG TGTTATGCGC CTCAGCTGAC TACCTTCACA AGCACGGGAC GCCAACTTGT
GCCGAAGATC TAAAAGATCA TAAGTACCTG CATTACAGTT ACATAGAAAT GGAAGGTAAG
GCTAGTCGCT ATCATTGGCT TAGGGGGAAA AACAATCAGC ATAACAGCAA ATTAGAAAGC
AATAACGGCG ATGTACTAGT TGAAGCCGCC ATAGCTGGCG CGGGATTGGT CTTGCAACCG
ACATTTATCG CCAGCGAAGC TATTCGCCAA GGCAAACTCA TCGAGATATT ACCTGAATGT
GAACCCGAGC CCTTAGGCTT ATATGCCGTG TATGCCCATA GAAAACTTCT GCCCAATAAG
ATCAGGTGCT TTATTGATTT TATTGAAGGG TATTATGGCG CGCCGCCCTA TTGGGATACG
TTGACTCCTT GA
|
|---|
| Protein sequence | MDRIDAMRAF VSVVTEGSFS HGASHLQLSP QLVSKYVSQL EVRLGVRLLN RTTRKVSLTE
AGTEYFQHAQ QILLSIDEMD AQLGGLQQQP KGTLRISAPV SFALKHLGRL VTDFQIAHPL
VNVDLQLNDR KVDIVEEGFD VALRIGQLKS SSLIAKHIAP IRVVLCASAD YLHKHGTPTC
AEDLKDHKYL HYSYIEMEGK ASRYHWLRGK NNQHNSKLES NNGDVLVEAA IAGAGLVLQP
TFIASEAIRQ GKLIEILPEC EPEPLGLYAV YAHRKLLPNK IRCFIDFIEG YYGAPPYWDT
LTP
|
|---|
| |