| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0685 |
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| Symbol | |
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| ID | 4016768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 788644 |
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| End bp | 789360 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637954670 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_561698 |
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| Protein GI | 91792047 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.301358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCTA TTCGCTTAGC CCATTACTTA GCCCAATGTG GCGTTGCCTC AAGACGCCAA
GCGAGCCGCT TGATTGAAGC GGGCCGGGTT CTGTTGAATG GGAACCAGGC AAGCCATACC
GATTACATTG ATGAGCACAA TGCCTCTTCC CTGCGGGTGG ATGGCAAGGC TATCGCACCC
GAAGCTAAGG CTTATTGGTT ATACAACAAA CCTATAGGTA TAGATTGTCG CCTACTCGCT
CAAGATCCAG CAAGCCTGAT TCATCAGCTT CCCAGTGCGC CTAGGCTCTA CCCCGCCGGC
CGTTTGGATA AGGACTCTCG AGGTTTGTTA TTGCTCACCA ATGATGGTGA CTTGACTCAT
AAACTGATGC ACCCCGACTT TTATCACCCT AAAACCTATC ATGTACAAGT TAACCAGCCA
CTCAAAGATG AGGACATCAT GGCCCTAAGC ACAGGTGTCG CTTACCCCGG TGTGTTAACT
CGGCGCTGTG AAGTGCGGCG GTTAGCCGAT GATAAGTTCG AGATGATATT GACCCAAGGC
TTAAATCGAC AAATTAGGCG CATGTGCAAA GCGCTGGGGT ATAAGGTCAT AGATTTACAG
CGCACGGCTA TCATGAAGCT TGAGCTGAAT TCAAAAGAAT TTGAGCAATT GGCTGACAAT
AAAATGCGGC CCCTGGAGGC CGCAGAACTC ATATCGTTAC TTTCGATACT CTCATAA
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| Protein sequence | MTSIRLAHYL AQCGVASRRQ ASRLIEAGRV LLNGNQASHT DYIDEHNASS LRVDGKAIAP
EAKAYWLYNK PIGIDCRLLA QDPASLIHQL PSAPRLYPAG RLDKDSRGLL LLTNDGDLTH
KLMHPDFYHP KTYHVQVNQP LKDEDIMALS TGVAYPGVLT RRCEVRRLAD DKFEMILTQG
LNRQIRRMCK ALGYKVIDLQ RTAIMKLELN SKEFEQLADN KMRPLEAAEL ISLLSILS
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