Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0576 |
Symbol | |
ID | 4016549 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 652017 |
End bp | 655250 |
Gene Length | 3234 bp |
Protein Length | 1077 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637954561 |
Product | heavy metal efflux pump CzcA |
Protein accession | YP_561589 |
Protein GI | 91791938 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTACAAA AATTAATTCA GGCCGCTGTT GCTAATCGCC TGTTAGTGGT GATTGCCCTA GTGTGCGCCC TATTGGCGAG CTTAGCGGCT TTGCCTAAGT TAAATCTCGA TGCTTTCCCC GATGTGACCA ATGTGCAGGT GACCATTAAC ACCGCCGCCG AAGGCTTAGC GGCCGAAGAA GTGGAGAAGC TCATCAGTTA TCCGGTTGAG TCGGCCATGT ATGCCTTGCC AGCAGTGACG GATGTACGCT CTTTGTCCCG CACTGGGCTG TCTATTGTGA CTGTGGTGTT CGCCGAGGGC ACAGATATTT ACTTTGCTCG CCAGCAAGTG TTCGAGCAGT TGCAAGCCGC TAAGGAAATG ATCCCAACGG GTGTGGGCGT GCCTGAAATT GGCCCTAATA CCTCGGGACT TGGGCAAATT TATCAGTACA TTCTTAAGGC GGAGCCTGAT TCTGGGGTGA GCGCGTTTGA GCTTAGAAGC CTGAATGATT ACCTGATAAA GCTGATTTTA ATGCCAGTCT CTGGGGTTAC CGAGGTGTTA TCTTTTGGCG GCGATGTGCG CCAATATCAG GTGCAGGTCG ACCCCAACAA ACTCAGCAGT TATGGCTTAT CGATGACCCA AGTCACCACG GCCCTTGAGA GCAATAACCG CAATGCCGGC GGCTGGTTTA TGGACCAAGG CCAAGAGCAA TTGGTGGTGC GCGGCTACGG CATGTTACCA GCAGGAAACG AAGGCTTATT GGCCATAGGG CAAATACCGC TAACAGAAGT CAAAGGCACC CCAGTGCGGG TGGCCGACAT TGCCAAGGTG GCCTTTGGCA GTGAAATCCG CGTCGGCGCC GTGACCATGA CCCGCCGCGA TGCCAATGGC GATGCTGAAA AACTAGGTGA AGTGGTGGCC GGAGTGGTAC TCAAGCGCAT GGGGGCGAAC ACTAAATCTA CCATAGATGA CATCAAGGCT CGGGTAAAAC TCATCGAGCA AGCCTTGCCT AGGGGGGTGT CATTTGAGGT ATTTTACGAC CAAGCAGATT TAGTCGACCA AGCCATCACC ACAGTGCGTG ATGCGCTACT CATGGCTTTT GTGTTTATCA TTATCATCTT GGCGCTGTTT TTAGTTAACC TTCGCGCTAC CTTATTGGTT TTATTATCTA TTCCAGTTTC GATTGGTCTA GCCTTAATGG TAATGTCCTA TTTTGGCCTG TCGGCTAATT TGATGTCATT AGGCGGCCTT GCCGTAGCCA TAGGTATGCT GGTGGATGGC TCTGTGGTAA TGGTTGAAAA TATCTTTAAG CATTTAACTC AGCCAGATAG ACGCCATCTT AAAGCCGCGC AAATGAGGGC CGATGGCGAA GCTGACCCTT ATCACGGCTA TGAAGATGGT GCTTTGCCCG CCAGTGAGCA TGAGATCGCA TTCGATGAAA ACCATGAGCC CAATATGGCG CTGCGCATCA TGCTGGCGGC TAAAGAAGTC TGTAGCCCTA TCTTCTTTGC TACCGCGATT ATTATCGTGG TATTTGCGCC CTTATTTGCC CTAGAAGGAG TGGAAGGTAA GCTGTTTCAG CCCATGGCGG TGAGTATTAT TCTGGCGATG CTCGCGGCCT TGTTGGTGGC ATTAATTGTC GTGCCTGCCT TAGCAGTATT CTTATTTAAA AAAGGCGTGG TATTGCGCCA AAGCCCGCTA TTAGTGCCGC TGGAATCTGG CTATCGCAAA CTATTGACCG CCACCATGGC ACGGCCAAAG CTTGTGATAT TGGCTGCTGC GGGGCTATTT GTTGGCAGCT TATTGTTAGT GCCAAAATTA GGGACTGAAT TTGTGCCCGA GCTTGAAGAG GGCACCATTA ACTTGAGGGT AACCTTAGCG CCCACGGCAA GCCTTGAGAC TTCGCTTGCC GTAGCCCCTA AGATCGAAGC CATGCTGCTT GAGTTTCCTG AGGTGAGCTA CGCCCTAAGC CGCATTGGTG CGCCAGAGCT TGGCGGCGAT CCAGAGCCTG TGAGTAATAT CGAGATTTAC ATAGGCTTAA ACCCCATCGA GTCTTGGACC ACGGCAGATT CACGCCTGGC ATTGCAACGG GAGATGGAAG ACAAACTCAA AGTGTTCCCA GGCTTGTTGT TTACCTTCTC ACAACCCATA GCCACCCGAG TGGATGAATT ATTGTCGGGC GTAAAAGCGC AGCTGGCGAT TAAAATCTTC GGAGATTCTC TGGATGTGCT AGCAACTAAA GGTCAGGTAC TCAGTGACTT AGTGGCTAAA ATACCAGGGG CCGTGGATGT GTCATTAGAG CAAGTGAGTG GTGAAGCTCA GCTGGTTATT CGCCCTAAGC GGGATAGTTT GGCCCGTTAT GGCATCAGTG TCGATCAGGT GATGAGTCTG GTGAGTCAAG GCGTTGGCGG TGTTAGTGCC GGTCAAGTTA TCGATGGTAA TGCCAGATAC GATATCAATG TGCGCTTAGC TAAGTCATTT AGGCAAACGC CAGATGCAGT GCAAGACTTG CTGCTAGTGG GCGCCAACGG TGCCACAGTA CGTCTTGGTG ATGTGGCAAG CGTCGAAGTT GAAATGGCGC CACCTAACAT TCGCCGTGAT GATGTGCAGC GCCGCGTGGT AGTGCAAGCC AATGTTGCAG GGCGAGACAT GGGCTCGGTG GTGGCGGATA TCTATAAAAT CATTCCCGAG GCGCAGTTGC CTGCGGGCTA CACAGTCGTG ATTGGCGGTC AATATGAGAA TCAGCAGCGC GCTCAGCAAA AACTGATGTT AGTGGTGCCT ATTTCCATAG GTTTGATTGC CTTGTTGCTG TATTTCTCCT TTGGCTCGCT AAAGCAAGTG GGGCTAATTA TGGCAAACGT GCCTTTAGCG CTGTTTGGTG GGGTTATCGC CTTGTACCTT AGTGGCACTT ATTTGTCAGT GCCTAGCTCC ATAGGGTTTA TCACCTTGTT TGGGGTGGCA GTGCTTAATG GCGTGGTCTT GGTGGACTCG ATAAACCAGC GCCGTCAAAG CGGCGAAAGC CTATATGAGT CAGTCTATGA AGGCACGGTT GGACGTTTGC GGCCCGTATT AATGACGGCG CTGACATCGG CATTGGGACT CATCCCAATT TTAATGTCAT CTGGGGTGGG CAGTGAAATT CAAAAGCCCT TAGCCGTGGT TATCATCGGC GGTCTGTTTA GCTCTACCGC CTTAACCTTG CTGGTATTAC CTACTCTGTA CCGCTTTTTA TATCAAGCTA AGCGCAACAG CTAA
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Protein sequence | MLQKLIQAAV ANRLLVVIAL VCALLASLAA LPKLNLDAFP DVTNVQVTIN TAAEGLAAEE VEKLISYPVE SAMYALPAVT DVRSLSRTGL SIVTVVFAEG TDIYFARQQV FEQLQAAKEM IPTGVGVPEI GPNTSGLGQI YQYILKAEPD SGVSAFELRS LNDYLIKLIL MPVSGVTEVL SFGGDVRQYQ VQVDPNKLSS YGLSMTQVTT ALESNNRNAG GWFMDQGQEQ LVVRGYGMLP AGNEGLLAIG QIPLTEVKGT PVRVADIAKV AFGSEIRVGA VTMTRRDANG DAEKLGEVVA GVVLKRMGAN TKSTIDDIKA RVKLIEQALP RGVSFEVFYD QADLVDQAIT TVRDALLMAF VFIIIILALF LVNLRATLLV LLSIPVSIGL ALMVMSYFGL SANLMSLGGL AVAIGMLVDG SVVMVENIFK HLTQPDRRHL KAAQMRADGE ADPYHGYEDG ALPASEHEIA FDENHEPNMA LRIMLAAKEV CSPIFFATAI IIVVFAPLFA LEGVEGKLFQ PMAVSIILAM LAALLVALIV VPALAVFLFK KGVVLRQSPL LVPLESGYRK LLTATMARPK LVILAAAGLF VGSLLLVPKL GTEFVPELEE GTINLRVTLA PTASLETSLA VAPKIEAMLL EFPEVSYALS RIGAPELGGD PEPVSNIEIY IGLNPIESWT TADSRLALQR EMEDKLKVFP GLLFTFSQPI ATRVDELLSG VKAQLAIKIF GDSLDVLATK GQVLSDLVAK IPGAVDVSLE QVSGEAQLVI RPKRDSLARY GISVDQVMSL VSQGVGGVSA GQVIDGNARY DINVRLAKSF RQTPDAVQDL LLVGANGATV RLGDVASVEV EMAPPNIRRD DVQRRVVVQA NVAGRDMGSV VADIYKIIPE AQLPAGYTVV IGGQYENQQR AQQKLMLVVP ISIGLIALLL YFSFGSLKQV GLIMANVPLA LFGGVIALYL SGTYLSVPSS IGFITLFGVA VLNGVVLVDS INQRRQSGES LYESVYEGTV GRLRPVLMTA LTSALGLIPI LMSSGVGSEI QKPLAVVIIG GLFSSTALTL LVLPTLYRFL YQAKRNS
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