| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0568 |
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| Symbol | |
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| ID | 4016541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 643654 |
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| End bp | 644142 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637954553 |
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| Product | sigma-70, region 4 type 2 |
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| Protein accession | YP_561581 |
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| Protein GI | 91791930 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0581915 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACTG AATTAACCTT GCTACTGCCC GCGTTGAGGC GCTTTGCCTA CTCGCTCACT
GGCACTATGC CAGATGCGGA TGATCTGGTG CAAAATACTG TGGTACGGCT CTTAAAATCC
CCGCCGCCAG AGGGCGTGCC CTTGGCTAAG TGGGCCTTTA AAATTTGCCG TAATCAATGG
ATAGATGATT ATCGCTCGCA AAAAGTGCGC ACCTTGGCAA CGGATAAGCC AGAATTGCAA
GACGAAAACT TCACCGACGG TGAAGCCGAG ATGATTAACG ATATTACTCT AGGGGAAGTC
AATACCGCCA TGAACTCATT ATCGGATGAG CAGCGTGAAG TGCTCTCCCT GATCGCGGTG
CAAGGCATGA GTTACAGTGA GGCTGCCGAT ATATTAGCCA TCCCGACGGG CACCATAATG
AGCCGTTTAG CACGCGCCAG GGCCAATATG GTGAGTTTTT TCAATCAAAA AAGTGGGAGC
ATGGCATGA
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| Protein sequence | MKTELTLLLP ALRRFAYSLT GTMPDADDLV QNTVVRLLKS PPPEGVPLAK WAFKICRNQW
IDDYRSQKVR TLATDKPELQ DENFTDGEAE MINDITLGEV NTAMNSLSDE QREVLSLIAV
QGMSYSEAAD ILAIPTGTIM SRLARARANM VSFFNQKSGS MA
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