| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0504 |
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| Symbol | |
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| ID | 4017103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 572895 |
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| End bp | 574256 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954490 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_561519 |
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| Protein GI | 91791868 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0524175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAACCA AATTAACACT ACTTTCAGCC GCATTATTAA CGGCCAGCTT ATCCAGCCCT
TTTATTCCCG TGAGTGCCAG CGCCGCCATC CCCCAAAGCG TTAATGGCCA AATGCTACCA
AGCCTTGCCC CCATGCTGGA AAAAACAACG CCTGCTGTGG TCTCAGTTGC CGTCTCTGGC
ACCCATGTCT CTAAGCAAAG AGTACCCGAC ATTTTTCGGC ACTTCTTCGG CCCTAATGGC
CCACAAGAAC AAACCCAAGA ACGGCCGTTC AGAGGATTAG GCTCTGGCGT TATTATTGAC
GCAAACAAAG GTTACATAGT CACAAACAAT CACGTCATTA ATGGGGCCGA TGACATTCAA
ATCGGTTTGT ACGATGGCCG CGAAGTCAAA GCTAAACTCA TTGGTACCGA TCCTGAGTCT
GACATCGCCT TACTGCAAAT TGAGGCTAAG AATCTCACCG CTATCAAACA GACTGATTCA
GAAGAGATCC GTGTGGGTGA TTTTGCCGTC GCCATAGGAA ACCCCTTCGG CTTAGGTCAA
ACCGTGACCT CTGGTATTGT CAGTGCCTTA GGTCGCAGCG GCCTAGGCAT AGAACAACTG
GAGAACTTCA TCCAAACCGA TGCGGCGATT AATAGCGGTA ACTCAGGCGG TGCCTTAGTG
AATTTAAACG GCGAATTAAT GGGGATAAAC ACCGCCATTG TCGCCCCAGG CGGTGGCAAC
GTAGGTATTG GTTTTGCCAT CCCAGCGAAC ATGGTCAACA ATTTAGTCGC ACAGATCATA
GAACACGGTG AGGTTAGGCG TGGGGTATTG GGAATTTCAG GTAGAGACCT AGATAGGGAG
CTTGCTAAAG GCTTTGGTCT AGATACTCAG CATGGCGGCT TTATTAATGA AGTCATGTCA
GGCAGTGCCG CGGAAAAAGC AGGCCTTAAA GCTGGGGATA TTATTACTAG TGTTAATGGC
AAAAAAATCA AAACCTTCCA GGAGCTTAGA GCCAAGGTTG CCACCCTTGG CGCAGGTGCC
AAAGTTGATT TAGGCATCAT TCGCGACAAT AAGACTAAGA GTATCACTGT GGTGCTCGGT
GAAGCCGATG CTACCGTGAG CTCAGAAGCT GGCGGGATCC ATCCTATGCT ACAAGGGGCT
AATTTAGAAA ACAGCAAAAA ATCCGGCATA GTGATCACAG AAGTAGCCCA AGGTTCACCC
GCTGCCATGA ATGGTCTTAA GAAGGGTGAT GTGATTGTTG GCATTAACCG CGACAGAATA
AGCGATCTTA AAACCTTAAA AGAACAGCTT AAAGACCCTA AAGGCTCTGT GGCACTTAAG
ATTTTACGGG ATGGCAGCCT GCTTTATCTC ATCTTAAGAT AA
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| Protein sequence | MRTKLTLLSA ALLTASLSSP FIPVSASAAI PQSVNGQMLP SLAPMLEKTT PAVVSVAVSG
THVSKQRVPD IFRHFFGPNG PQEQTQERPF RGLGSGVIID ANKGYIVTNN HVINGADDIQ
IGLYDGREVK AKLIGTDPES DIALLQIEAK NLTAIKQTDS EEIRVGDFAV AIGNPFGLGQ
TVTSGIVSAL GRSGLGIEQL ENFIQTDAAI NSGNSGGALV NLNGELMGIN TAIVAPGGGN
VGIGFAIPAN MVNNLVAQII EHGEVRRGVL GISGRDLDRE LAKGFGLDTQ HGGFINEVMS
GSAAEKAGLK AGDIITSVNG KKIKTFQELR AKVATLGAGA KVDLGIIRDN KTKSITVVLG
EADATVSSEA GGIHPMLQGA NLENSKKSGI VITEVAQGSP AAMNGLKKGD VIVGINRDRI
SDLKTLKEQL KDPKGSVALK ILRDGSLLYL ILR
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