Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0489 |
Symbol | |
ID | 4017779 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 560687 |
End bp | 562168 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637954475 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_561504 |
Protein GI | 91791853 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.706481 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCGT CACTCCAACT TAAAATGGGT CAACATCTGA CTATGACCCC TCAGCTGCAA CAGGCGATTC GCCTGCTGCA ACTTTCTTCA TTGGAGCTAC AGCAAGAAAT TCAACAAGCC CTTGAGTCCA ATCCCTTATT GGAACTAGAA GACGAGTTCT CACAAGAAAA ACCCCCTAAA AAAGATGACA TCCAAGGTGA TACCGATTTC AGCGACAATA GCCAAGTCAG CGTCGAGAAA GACACCTCCT CTGTGGACAC AGCAGAATCC TTAACCAAGG AATCCATGCC CGATGAGTTA CCCATGGATA CCACCTGGGA TGAAGTCTTC ACCGCAGCGC CCAATTCAGG TTCAGCCAGT GGTGGCAGTT TCGATGATAT GCCCTTTCAA GGGGAAACCA CCGAAGGCTT ATACGAGCAT CTAGAGTGGC AAAAAAATCT CACCCCCTTC TCTGAAACCG ATCGGGCCAT CGCCACCGCC ATCATAGATG CCATCGATGA GCGCGGTTAT CTCACTCAGT CCACCCAAGA TATTCTCGAA GCCATGGGCA ACAGCGATGT TGAACTGGAT GAAGTCGAAG CCGTATTAAA ACGAGTACAG CATTTCGACC CTGTGGGCAT AGCCGCGAGA GACCTGCGGG AGTGTTTGTT GATCCAGTTG GCCCAATATG CCGCCGACGT GCCTCATTTA AACAATGCAC GTATGCTCAT CGATGAGTAT TTAGACTTGA TCGCAGGCCG CGATTTTAGA TTGTTAATGC GTAAAACTCG CCTTAAAGAA GACGAACTCA GGGACGCCAT CGCCTTAATC CAATCCTTAA ATCCAAGGCC TGGGCTTATT GTGGCCCATA ATGAAGATGA ATACGTGATC CCTGATGTGA CTGTACTCAA GAAGAATGGC CGCTGGATGG TTGAGCTCAA TCCCGATTGT ATGCCAAAAA TCAGCGTGAA TCAGCAGTAT GCCGCTATGG CTCGCAGCAG CAAGAGCCAA GTCGATAGCC AATTTATTCG TGGTAATTTG CAAGAGGCCA AATGGTTTAT TAAAAGCTTA GAGAGCCGTA ACGATACCTT GCTCAAAGTG GCTAATTGCA TAGTTCAATA TCAACAAGGG TTCTTCGAGT TTGGTGAAGA AGCAATGAAA CCTATGGTTC TCAATGACAT AGCAGAAGCC GTTGAGATGC ATGAGTCGAC CATTTCTCGT GTTACCACCC AAAAATACAT GCACACCCCC AAAGGCTTGT TTGAACTCAA GTACTTCTTT TCAAGCCATG TGAGTACCGA TGATGGGGGT GAATGCTCAT CTACCGCAAT CCGCGCTTTC ATTAAAAAGC TGGTTGCCGC AGAAAACCAG AAAAAGCCAT TAAGCGATAG CAAAATGGCT CAACTTCTGG CGGAACAGGG GATTAATGTT GCCCGTCGTA CGATAGCAAA ATATCGTGAA GCAATGCTCA TCCCCCCCTC AAACCAACGT AAGAGTTTAT AA
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Protein sequence | MKASLQLKMG QHLTMTPQLQ QAIRLLQLSS LELQQEIQQA LESNPLLELE DEFSQEKPPK KDDIQGDTDF SDNSQVSVEK DTSSVDTAES LTKESMPDEL PMDTTWDEVF TAAPNSGSAS GGSFDDMPFQ GETTEGLYEH LEWQKNLTPF SETDRAIATA IIDAIDERGY LTQSTQDILE AMGNSDVELD EVEAVLKRVQ HFDPVGIAAR DLRECLLIQL AQYAADVPHL NNARMLIDEY LDLIAGRDFR LLMRKTRLKE DELRDAIALI QSLNPRPGLI VAHNEDEYVI PDVTVLKKNG RWMVELNPDC MPKISVNQQY AAMARSSKSQ VDSQFIRGNL QEAKWFIKSL ESRNDTLLKV ANCIVQYQQG FFEFGEEAMK PMVLNDIAEA VEMHESTISR VTTQKYMHTP KGLFELKYFF SSHVSTDDGG ECSSTAIRAF IKKLVAAENQ KKPLSDSKMA QLLAEQGINV ARRTIAKYRE AMLIPPSNQR KSL
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