Gene Sden_0489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0489 
Symbol 
ID4017779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp560687 
End bp562168 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content47% 
IMG OID637954475 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_561504 
Protein GI91791853 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.706481 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCGT CACTCCAACT TAAAATGGGT CAACATCTGA CTATGACCCC TCAGCTGCAA 
CAGGCGATTC GCCTGCTGCA ACTTTCTTCA TTGGAGCTAC AGCAAGAAAT TCAACAAGCC
CTTGAGTCCA ATCCCTTATT GGAACTAGAA GACGAGTTCT CACAAGAAAA ACCCCCTAAA
AAAGATGACA TCCAAGGTGA TACCGATTTC AGCGACAATA GCCAAGTCAG CGTCGAGAAA
GACACCTCCT CTGTGGACAC AGCAGAATCC TTAACCAAGG AATCCATGCC CGATGAGTTA
CCCATGGATA CCACCTGGGA TGAAGTCTTC ACCGCAGCGC CCAATTCAGG TTCAGCCAGT
GGTGGCAGTT TCGATGATAT GCCCTTTCAA GGGGAAACCA CCGAAGGCTT ATACGAGCAT
CTAGAGTGGC AAAAAAATCT CACCCCCTTC TCTGAAACCG ATCGGGCCAT CGCCACCGCC
ATCATAGATG CCATCGATGA GCGCGGTTAT CTCACTCAGT CCACCCAAGA TATTCTCGAA
GCCATGGGCA ACAGCGATGT TGAACTGGAT GAAGTCGAAG CCGTATTAAA ACGAGTACAG
CATTTCGACC CTGTGGGCAT AGCCGCGAGA GACCTGCGGG AGTGTTTGTT GATCCAGTTG
GCCCAATATG CCGCCGACGT GCCTCATTTA AACAATGCAC GTATGCTCAT CGATGAGTAT
TTAGACTTGA TCGCAGGCCG CGATTTTAGA TTGTTAATGC GTAAAACTCG CCTTAAAGAA
GACGAACTCA GGGACGCCAT CGCCTTAATC CAATCCTTAA ATCCAAGGCC TGGGCTTATT
GTGGCCCATA ATGAAGATGA ATACGTGATC CCTGATGTGA CTGTACTCAA GAAGAATGGC
CGCTGGATGG TTGAGCTCAA TCCCGATTGT ATGCCAAAAA TCAGCGTGAA TCAGCAGTAT
GCCGCTATGG CTCGCAGCAG CAAGAGCCAA GTCGATAGCC AATTTATTCG TGGTAATTTG
CAAGAGGCCA AATGGTTTAT TAAAAGCTTA GAGAGCCGTA ACGATACCTT GCTCAAAGTG
GCTAATTGCA TAGTTCAATA TCAACAAGGG TTCTTCGAGT TTGGTGAAGA AGCAATGAAA
CCTATGGTTC TCAATGACAT AGCAGAAGCC GTTGAGATGC ATGAGTCGAC CATTTCTCGT
GTTACCACCC AAAAATACAT GCACACCCCC AAAGGCTTGT TTGAACTCAA GTACTTCTTT
TCAAGCCATG TGAGTACCGA TGATGGGGGT GAATGCTCAT CTACCGCAAT CCGCGCTTTC
ATTAAAAAGC TGGTTGCCGC AGAAAACCAG AAAAAGCCAT TAAGCGATAG CAAAATGGCT
CAACTTCTGG CGGAACAGGG GATTAATGTT GCCCGTCGTA CGATAGCAAA ATATCGTGAA
GCAATGCTCA TCCCCCCCTC AAACCAACGT AAGAGTTTAT AA
 
Protein sequence
MKASLQLKMG QHLTMTPQLQ QAIRLLQLSS LELQQEIQQA LESNPLLELE DEFSQEKPPK 
KDDIQGDTDF SDNSQVSVEK DTSSVDTAES LTKESMPDEL PMDTTWDEVF TAAPNSGSAS
GGSFDDMPFQ GETTEGLYEH LEWQKNLTPF SETDRAIATA IIDAIDERGY LTQSTQDILE
AMGNSDVELD EVEAVLKRVQ HFDPVGIAAR DLRECLLIQL AQYAADVPHL NNARMLIDEY
LDLIAGRDFR LLMRKTRLKE DELRDAIALI QSLNPRPGLI VAHNEDEYVI PDVTVLKKNG
RWMVELNPDC MPKISVNQQY AAMARSSKSQ VDSQFIRGNL QEAKWFIKSL ESRNDTLLKV
ANCIVQYQQG FFEFGEEAMK PMVLNDIAEA VEMHESTISR VTTQKYMHTP KGLFELKYFF
SSHVSTDDGG ECSSTAIRAF IKKLVAAENQ KKPLSDSKMA QLLAEQGINV ARRTIAKYRE
AMLIPPSNQR KSL