| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0430 |
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| Symbol | |
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| ID | 4017964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 500909 |
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| End bp | 502507 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637954416 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561445 |
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| Protein GI | 91791794 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAAT CAGGCTTAGT TATTCGATTA GCAATCGTTA TTATTTTTAC AGCAGTGATT
GTTGGGCTGA TTACCACCCA AATTTTCTAT CGCTTTACGT TTCTTAATGA ACAAGTACTG
GGTCAGCAAA GTATTCACCA ATTATCAAAC ACAGTATCAA AGACTGCATC GATAGCGAGT
TATTTGGGTG ATGAAGAACT GGCCAGAGAA GTGGTTAATG GCTTAATTAG TAATGATGTT
ATTACCTCTG CAGCGATTAA AACCGATACC CTAGTGGTGA AGAGTGATAA TTTCCCTGAC
GCTGACGCTT CCATCGATAC ACTCGAGTTT GCTTTGTATT CTCCTTTTCA AAAAGATCGA
CGTGTGGGGT TACTTATCGT TGAAGCAAAT GATGATTATC TGCGCGTTAA AGCGAATAAT
ATAAGTGCAA CTAATACGTT TTTTGTGGGT ATTGAGGCAC TGATTATCAC CATCATTTCA
ATTTTAGTTA CCTATTATGT CATTACTCGT CCTATTTTAA ACATAGGCAA AGCCTTGCAC
TCAATCAGTC CAGGTACCAG CGAACGAATA GCCAAGCCTC TTTCTCATCA AAAAAGTGAG
ATAGGCCAGC TCGCCGATGA TGTTAATGAA TTATTAGCTA AAGCAGAACA ACAATTACTA
AAAGAAAAAA GTCTTAGAAG CGAAGTAGAA GTATTAGAGT CAAGATTCAG AATGTTGTTT
GAAAATGCGA CCTCTGCAAT AGCCCTGGTA GAACCCAAGG GCGATTTACT GCTCTATAAT
GAGACGTTTG AAACCTTAAT TCAAAAACTG CAGTTACCGT TGAAAAAAAA TTACGGTAAT
TATTTGCAAG ATCTGTTCAT CATGAAGAAA GAACTGCATG AGCAAATCCA AATAGCGTTT
GAAAATAACG AGTCAGCAAT GGCTGAGTTA GAATTAATCT CACCTCAAGA TGAAAAAATT
TGGATGCAAG TGGTGGTAAC ACCTTTGGTC ACTGATGATT TTCAAGAGAA TTATCAAATT
ACCTTACACG ATATCTCAAA ACGTAAGTAT CAAATATCAT TACTGGATAA AAAAGCAAAC
TTCGATAGCT TAACCAATTT ATTTAATCGT CATGCGGCAG AGCAACACCT AAGACAACTA
ATGGCAAATC GTGAGCCTTT TGCCCTGATC ATGATGGACT TGAATGACTT TAAACCCATC
AACGACATTT TTGGTCATGA CGCGGGTGAT GAACTATTGA TACATGTATC AAGCCAATTA
TTAAAAAGTG TAAGAAAAGC AGACATATTA GCACGTTGGG GGGGTGATGA ATTTGTGCTT
ATTTTACCAA AGGCTTCTAG GGAAGACGTT ATTAATGTTT GCGCTAAATC AGCAGCAAAA
CTGAGTAAGC CACATAACTT GTCACAGCAT GATAAAAGCG TTTTTGTTAC TGCTAGTATG
GGCGTTAGCT TTTATCCAGA TGATCAAGTT GAATTATTAG AGTTAATCAG ATCCGCTGAC
AAGGCCATGT ATCAAGCGAA AAAACAAAAA ACGATTAACA ATGAACTTTA CTTATCTTTT
ACCAGTGACA AAGCCAACCT AGTAAGTGGT AAAAAATGA
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| Protein sequence | MNKSGLVIRL AIVIIFTAVI VGLITTQIFY RFTFLNEQVL GQQSIHQLSN TVSKTASIAS
YLGDEELARE VVNGLISNDV ITSAAIKTDT LVVKSDNFPD ADASIDTLEF ALYSPFQKDR
RVGLLIVEAN DDYLRVKANN ISATNTFFVG IEALIITIIS ILVTYYVITR PILNIGKALH
SISPGTSERI AKPLSHQKSE IGQLADDVNE LLAKAEQQLL KEKSLRSEVE VLESRFRMLF
ENATSAIALV EPKGDLLLYN ETFETLIQKL QLPLKKNYGN YLQDLFIMKK ELHEQIQIAF
ENNESAMAEL ELISPQDEKI WMQVVVTPLV TDDFQENYQI TLHDISKRKY QISLLDKKAN
FDSLTNLFNR HAAEQHLRQL MANREPFALI MMDLNDFKPI NDIFGHDAGD ELLIHVSSQL
LKSVRKADIL ARWGGDEFVL ILPKASREDV INVCAKSAAK LSKPHNLSQH DKSVFVTASM
GVSFYPDDQV ELLELIRSAD KAMYQAKKQK TINNELYLSF TSDKANLVSG KK
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