| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0410 |
|---|
| Symbol | |
|---|
| ID | 4017832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 480599 |
|---|
| End bp | 481354 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637954397 |
|---|
| Product | putative cation efflux protein |
|---|
| Protein accession | YP_561426 |
|---|
| Protein GI | 91791775 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0293861 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCACTTAA CTAAGCTCCA CATAACTTCA TTGGTATTGT CACTCAGCGC TATTCCTGTA
TTTAACGGCC ATGCGGACAC TATCAATATC AGCTCAGACA TCTGGTGCCC CTATATTTGT
GATGAAAACC CAGGCTATGT AGTCGAACTG ACTAACAGGG CTTTTGAGCT TATGGGCCAT
GAGGTGCAAT TTAATTTAAT GCCCTTTAAT CGCGCCTTGT TGGAAGCACA AAAAGGCAAT
GTTGATGCCG TGCTGGCAGT CACGCCTAAA AATTTAGTCG ACCACCAACT TCACAGTGGC
GAGATGAAAA TTGGCTTAAG TTATAATGAC TTTTACACCC TAACAACCAA CAAGTGGCGT
TTTACTGAAT TAGAAGATCT GAATCAACAT TCTGTTGCCA TCATCAGCGG TTATGATTAC
GACGCTATCC AAGATCATAT CGATACTAAC CCCGATGCTT TCTACCTTGC CACAGGGGAA
AACCCCTTAG CCATGAACAT TAAGCGATTG ATAAGAGGTA GATTTCAGAT CTTATTAGGC
AACCGTAATG TCATCAGTTA CACATCCAAA CAACTTAAAA TGGGAGAGAA GATCCGTTAT
GCGGGCAGTT TTGGCACTCC TTTACCCTTG TATATAGGGT TCAGTGTATC CAAGCGTCAT
TATGCGGATA TTTTTACAGA AGGAATGGCT AAGCTTAAGG CCAACGGTGA ATACGATAAA
ATCTTAATTA AGTACCAAAT TTATCCTTTC GACTAG
|
|---|
| Protein sequence | MHLTKLHITS LVLSLSAIPV FNGHADTINI SSDIWCPYIC DENPGYVVEL TNRAFELMGH
EVQFNLMPFN RALLEAQKGN VDAVLAVTPK NLVDHQLHSG EMKIGLSYND FYTLTTNKWR
FTELEDLNQH SVAIISGYDY DAIQDHIDTN PDAFYLATGE NPLAMNIKRL IRGRFQILLG
NRNVISYTSK QLKMGEKIRY AGSFGTPLPL YIGFSVSKRH YADIFTEGMA KLKANGEYDK
ILIKYQIYPF D
|
|---|
| |