| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0395 |
|---|
| Symbol | |
|---|
| ID | 4017141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 462985 |
|---|
| End bp | 463488 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637954380 |
|---|
| Product | divergent AAA region |
|---|
| Protein accession | YP_561413 |
|---|
| Protein GI | 91791762 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGC TTACCTTCGC ATTAGATGAT ATTAATCACC TACAAGAATC GGCTCAAGTT
GAGTTTAAAT TGGCAGGCGG CCGCGATGGC ACTGGCCAGT TACCTGAAGA TATGTGGGAA
ACCTACAGCG CATTCGCTAA TACTTTAGGC GGTGAGATCA TTCTTGGGGT GCGTGAAGAC
AAGGGCGAAT TTACCATAGA GGGAATAATC AATCCTATGC CTATGTTGAG TGAAATTTGG
GAAATCCTTA ACGACCCGAC CAAGATAAGC CATAACATAC TGGCGCCAAC TGATGTGCAA
ATTATCGAGA TTGTGTCAAA AAAGCTTATT CGCCTGCATA TTCCCGCTGT AGATAAAAAC
CTCAGGCCCA TCTATATTGG CCAAGATCCA TTTTCCGGCA GCTATTTTAG AGTGGGAGAT
GCCGACATGC GCGCCAGTCA TGAACAAGTA AAACAAATGC GCCAGCGTTC GGGCATAGAT
CTTACACTGG CGAAACGCGG CTAA
|
|---|
| Protein sequence | MTTLTFALDD INHLQESAQV EFKLAGGRDG TGQLPEDMWE TYSAFANTLG GEIILGVRED
KGEFTIEGII NPMPMLSEIW EILNDPTKIS HNILAPTDVQ IIEIVSKKLI RLHIPAVDKN
LRPIYIGQDP FSGSYFRVGD ADMRASHEQV KQMRQRSGID LTLAKRG
|
|---|
| |