Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0388 |
Symbol | hemC |
ID | 4017522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 456537 |
End bp | 457484 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637954373 |
Product | porphobilinogen deaminase |
Protein accession | YP_561406 |
Protein GI | 91791755 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.895145 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGCGT TTCACATGTC TCAACATCTT ATTCGTATCG CGACTCGCAA GAGTCCATTG GCCTTATGGC AAGCTGAGTT TGTCAAAGCG GAACTCGAAC GTATTCACCC TGGCTTATCG GTCGAGCTCG TCCCTATGAC CACCAAAGGG GATGTACTGT TAGATACACC TCTAGCAAAA GTGGGCGGGA AAGGGCTATT CGTCAAAGAG TTAGAAGTTG CCATGTTAGA GGATCGCGCC GACATCGCCG TGCATTCTAT GAAAGATGTT CCCGTGGATT TCCCCGAGGG CCTAGGCTTA GAAATCATCT GTGAACGTGA AGACCCACGT GATGCCTTCG TTTCAAACAA CTTCGCCAAC CTAGCCGAGC TGCCAAAAGG CGCCGTTGTG GGCACCTCGA GCCTTCGTCG TCAGTGCCAG ATCCGCGCCA TGCGACCAGA TTTAATTATC AAAGACTTGC GCGGCAATGT GGGCACTCGT CTGGCGAAAC TCGATAGCGG TGACTATGAT GCCATCATAC TCGCTGCAGC AGGTCTTATT CGCTTAAAAC TCATCTCGCG CATTGCCAGC TATATCAGCC CTGAAGAATC ATTACCTGCC AATGGCCAAG GGGCTGTCGG CATAGAATGT CGCACTGATG ATGCCAGAGT GAAGGCATTG CTCGCACCAC TTGAACATTT AGAGACTCGT TATAGAGTCA TTGCTGAGCG CGCCATGAAC ACTCGCTTAG AAGGCGGCTG CCAGGTACCC ATTGGCGCTT ATGCTGAAAT TGAAGGCGAT GAACTTACAC TGAGGGGCTT AGTGGGTAAT CCTGATGGCA GCCAGATCAT CACAGGCCAA GTCAAAGGCC TTAAGAGTGA AGCGAGTCAA TTAGGTGAGC AGTTGGCTGA AATATTATTA GCCCAAGGGG CTAAAACAAT TTTAGATGCT GTATATGGCA AGGCATAA
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Protein sequence | MEAFHMSQHL IRIATRKSPL ALWQAEFVKA ELERIHPGLS VELVPMTTKG DVLLDTPLAK VGGKGLFVKE LEVAMLEDRA DIAVHSMKDV PVDFPEGLGL EIICEREDPR DAFVSNNFAN LAELPKGAVV GTSSLRRQCQ IRAMRPDLII KDLRGNVGTR LAKLDSGDYD AIILAAAGLI RLKLISRIAS YISPEESLPA NGQGAVGIEC RTDDARVKAL LAPLEHLETR YRVIAERAMN TRLEGGCQVP IGAYAEIEGD ELTLRGLVGN PDGSQIITGQ VKGLKSEASQ LGEQLAEILL AQGAKTILDA VYGKA
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