Gene Sden_0388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0388 
SymbolhemC 
ID4017522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp456537 
End bp457484 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content50% 
IMG OID637954373 
Productporphobilinogen deaminase 
Protein accessionYP_561406 
Protein GI91791755 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.895145 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCGT TTCACATGTC TCAACATCTT ATTCGTATCG CGACTCGCAA GAGTCCATTG 
GCCTTATGGC AAGCTGAGTT TGTCAAAGCG GAACTCGAAC GTATTCACCC TGGCTTATCG
GTCGAGCTCG TCCCTATGAC CACCAAAGGG GATGTACTGT TAGATACACC TCTAGCAAAA
GTGGGCGGGA AAGGGCTATT CGTCAAAGAG TTAGAAGTTG CCATGTTAGA GGATCGCGCC
GACATCGCCG TGCATTCTAT GAAAGATGTT CCCGTGGATT TCCCCGAGGG CCTAGGCTTA
GAAATCATCT GTGAACGTGA AGACCCACGT GATGCCTTCG TTTCAAACAA CTTCGCCAAC
CTAGCCGAGC TGCCAAAAGG CGCCGTTGTG GGCACCTCGA GCCTTCGTCG TCAGTGCCAG
ATCCGCGCCA TGCGACCAGA TTTAATTATC AAAGACTTGC GCGGCAATGT GGGCACTCGT
CTGGCGAAAC TCGATAGCGG TGACTATGAT GCCATCATAC TCGCTGCAGC AGGTCTTATT
CGCTTAAAAC TCATCTCGCG CATTGCCAGC TATATCAGCC CTGAAGAATC ATTACCTGCC
AATGGCCAAG GGGCTGTCGG CATAGAATGT CGCACTGATG ATGCCAGAGT GAAGGCATTG
CTCGCACCAC TTGAACATTT AGAGACTCGT TATAGAGTCA TTGCTGAGCG CGCCATGAAC
ACTCGCTTAG AAGGCGGCTG CCAGGTACCC ATTGGCGCTT ATGCTGAAAT TGAAGGCGAT
GAACTTACAC TGAGGGGCTT AGTGGGTAAT CCTGATGGCA GCCAGATCAT CACAGGCCAA
GTCAAAGGCC TTAAGAGTGA AGCGAGTCAA TTAGGTGAGC AGTTGGCTGA AATATTATTA
GCCCAAGGGG CTAAAACAAT TTTAGATGCT GTATATGGCA AGGCATAA
 
Protein sequence
MEAFHMSQHL IRIATRKSPL ALWQAEFVKA ELERIHPGLS VELVPMTTKG DVLLDTPLAK 
VGGKGLFVKE LEVAMLEDRA DIAVHSMKDV PVDFPEGLGL EIICEREDPR DAFVSNNFAN
LAELPKGAVV GTSSLRRQCQ IRAMRPDLII KDLRGNVGTR LAKLDSGDYD AIILAAAGLI
RLKLISRIAS YISPEESLPA NGQGAVGIEC RTDDARVKAL LAPLEHLETR YRVIAERAMN
TRLEGGCQVP IGAYAEIEGD ELTLRGLVGN PDGSQIITGQ VKGLKSEASQ LGEQLAEILL
AQGAKTILDA VYGKA