| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0353 |
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| Symbol | murD |
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| ID | 4017876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 394074 |
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| End bp | 395396 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954334 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_561371 |
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| Protein GI | 91791720 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACTC AATTCACGCA CATAGTACTA GGACTGGGGG CCACAGGGCT TTCTGTAGTG
CGTTATTTAG TGTCTCAAGG CATCAAGCCC TTGGTGATGG ATAGCAGACG CAATCCTCCT
GGGGCCGATG TATTAGCACA AGAGTTTGCC GATATTGAGC TGATTACTGG TGGTTTCGAT
TGCCGTTATT TAGTCCAGGC ACAACAGCTA GTGATAAGCC CAGGTATTGC CATAGATACC
CCAGAAGTGC GCGCGGCGAT GGACATGGGC ATAGAAGTCA TAGGTGATGT TGAGCTGTTT
GCTCGCGCCA TTGCCGATAA AAAGCCCTGC GTGATTGGCA TTACCGGCTC GAACGGGAAA
ACCACTGTCA CCACTTTAGT CTATGAAATG CTGTTGGCGG CGGGGTTGAA GGTTGCAGTT
GGCGGCAATA TAGGCACGCC AGCATTAGAT TTGCTCGCCA TGGACGTGGA TTATTATGTG
CTCGAATTAT CGAGTTTTCA GCTAGAAACC ACCTATAGCC TTAATTGTAT CGCCGCGACC
TGTTTAAATA TTTCAGAAGA TCACATGGAC AGATACAGTG ATTTAACCGC TTATCGCAAT
GCTAAATTGC GCCTATACGA TCAGAGCCGT TTCATCATGT ATAACCTAGA TGATGAGCTG
ACTTACCCCC ATGAACCCAT GAATCAAAAC CATTTTGGTT TAGGGGTACC AGATGGTGAT
GCTTGGGGCT TAGGTGACGG TAAGATATAT CACGGCGATA GCGACATCAT TAACCTCATA
GATGTGGCCT TAATTGGCAG TCATAACCAT GGCAATCTAC TGGCGGCAAT GGCGTTAGTG
CATGCCTGCG GCGTCGAAAA AGAGCCCATG GTCACAGTGG CTAAGACATT TAGCGGCTTG
TCCCATCGCT GTGAGTTGGT GGCGGTTAAA CAGGGCGTGT CTTACATCAA TGATTCTAAA
GCGACTAATG TTGGCGCTAC TGTGGCGGCA TTAGAAGGCT TAAGCACTCA TCTTGGTGAA
GTGTACTTAA TTGCCGGAGG TGACGGTAAA GGCGCTGACT TTAGGCCTTT GACTCAAGCG
CTTAGCAATG TTGTGCAGCT TATTACTTTG GGCAGGGATG GCCATAAACT AGCAAAATTA
AAGCCAGGCG CCATTGAAGT TGCCACCATG GCAGAAGCGG TAGCCAAAGC CGCTGAAATG
GCATATTCAG GCGACATCGT CTTGCTATCA CCCGCCTGCG CCAGTTTAGA CATGTATAAG
AATTTTATGG CAAGGGGTGA TGACTTTAGG CAATTGGTGG AGCAGCTCCC CGATGGTGTC
TAA
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| Protein sequence | MQTQFTHIVL GLGATGLSVV RYLVSQGIKP LVMDSRRNPP GADVLAQEFA DIELITGGFD
CRYLVQAQQL VISPGIAIDT PEVRAAMDMG IEVIGDVELF ARAIADKKPC VIGITGSNGK
TTVTTLVYEM LLAAGLKVAV GGNIGTPALD LLAMDVDYYV LELSSFQLET TYSLNCIAAT
CLNISEDHMD RYSDLTAYRN AKLRLYDQSR FIMYNLDDEL TYPHEPMNQN HFGLGVPDGD
AWGLGDGKIY HGDSDIINLI DVALIGSHNH GNLLAAMALV HACGVEKEPM VTVAKTFSGL
SHRCELVAVK QGVSYINDSK ATNVGATVAA LEGLSTHLGE VYLIAGGDGK GADFRPLTQA
LSNVVQLITL GRDGHKLAKL KPGAIEVATM AEAVAKAAEM AYSGDIVLLS PACASLDMYK
NFMARGDDFR QLVEQLPDGV
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