Gene Sden_0267 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0267 
Symbol 
ID4020378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp305182 
End bp305850 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content48% 
IMG OID637954249 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_561286 
Protein GI91791635 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.137082 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCCAT TTTTAATTGC TCCCTCTATT TTATCTGCAG ATTTTGCCCG CTTAGGTGAT 
GACGTTAAAG CGGTATTAGA TGCTGGTACC GATGTGGTGC ATTTCGATGT GATGGATAAC 
CATTATGTGC CCAATTTAAC CATAGGCCCT ATGGTCTGCA CTGCGCTACG CAATTACGGC 
ATTACCGCCG ATATTGATGT ACACCTTATG GTTAAGCCTG TGGATCGCAT TATTCCTGAT 
TTTGCCAAGG CTGGCGCCTC GATTATTACT TTCCATCCAG AAGCCTCAGA GCATATTGAC 
CGTACTTTGC AGCTTATCAA AGAATCAGGC TGTAAAGCGG GACTAGTGTT TAATCCGGCA 
ACGCCATTGC ATTATCTCGA TCATGTGATG GACAAACTAG ACGTTATCTT ACTGATGTCG 
GTAAATCCGG GTTTTGGCGG TCAATCATTC ATTCCTGCGA CCTTAGATAA GTTACGCCAA 
GTGCGCGCTC GCATCGATGC CAGTGGCTTT GATATCCGCC TAGAGGTGGA TGGCGGGGTT 
AAAGTGGATA ATATCGCCGA GATTGCAGCT GCGGGTGCCG ATATGTTTGT CGCGGGCTCA 
GCCATTTTTA ACCAGCCAGA CTACAAAGTC GTGGTCGATA AGATGCGCGC CGAATTAGCC 
AAGGCGTAA
 
Protein sequence
MRPFLIAPSI LSADFARLGD DVKAVLDAGT DVVHFDVMDN HYVPNLTIGP MVCTALRNYG 
ITADIDVHLM VKPVDRIIPD FAKAGASIIT FHPEASEHID RTLQLIKESG CKAGLVFNPA 
TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPATLDKLRQ VRARIDASGF DIRLEVDGGV 
KVDNIAEIAA AGADMFVAGS AIFNQPDYKV VVDKMRAELA KA