Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0262 |
Symbol | |
ID | 4020373 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 300680 |
End bp | 301753 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637954244 |
Product | 3-dehydroquinate synthase |
Protein accession | YP_561281 |
Protein GI | 91791630 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0337] 3-dehydroquinate synthetase |
TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00142699 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACAGA TCCAAGTCAA TTTAGGTGAC AGAAGTTATC CCATACACAT TGGCTTAGAT CTGTTAAAAC AGCAGCAGAC CTTTCAATCG CTTCAATCCA AGAAAGTCTT CATTGTCACA AATGATGTTG TCGCGCCTTT GTACTTAACT CAAGTCAAAG CCGCGTTGGC AGATTGTGCC TCTGTGGACG TTTTTGTGTT GCCTGATGGT GAAAAAAATA AAGATTTAGC CCATTTAGAG CAGATTTTTT CGGCGTTATT AGAAAAAAAC TACGCTCGGG ATACCACATT GCTGGCCTTA GGTGGCGGTG TGATTGGTGA TATGACAGGC TTTGCCGCCG CATGTTATCA AAGAGGGGTG CCTTTTGTTC AAGTTCCCAC AACCTTATTA GCGCAAGTCG ACTCCTCTGT CGGTGGAAAA ACTGCGGTTA ATCATCCCTT AGGTAAGAAC ATGATTGGGG CATTTTATCA GCCTCAATGT GTGATTATCG ATACCCAGTG TTTACACAGT TTGCCTAAAG CGGAGTTTGA CGCAGGTATG GCTGAGGTGA TCAAATACGG TATCATTTGG GATGCCGAGT TTTTCCTCTG GTTAGAAAAC AATATCGCAG CACTTAAGGC GTTAGATACG CAGGCGCTGA CTTATGCTAT CGCCAAATGT TGTGCTATTA AGGCCGATAT TGTGTCTCAA GATGAGACAG AGCAAGGTGT GCGGGCATTG TTGAATTTAG GTCATACTTT TGGCCATGCT ATTGAAGCGC AAATGGGTTA TGGTAATTGG TTGCACGGTC AAGCGGTTGC CGCAGGAAGT GTGCTGGCGG CCAAAACTGC CTTAGCGCTG GGTCTATTGG ATGCTCTCAG CGTGCAAAGA ATAGAAAACC TCTTTCGTGC ATTTGATTTA CCTATTGATG GGCCGCAAAG CATGGCGTTT TCTGACTATA TGCGACATAT GCGCCGGGAT AAAAAGGTAC TGGCGAGTAA AATTAGGCTG ATATTACCTC AAGCCATAGG CCAGGCTGGA ATTTATAGTG ATGTGGATGA AGCCTTATTA GCGCAGGTTA TCAACCCGTC TTAA
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Protein sequence | MQQIQVNLGD RSYPIHIGLD LLKQQQTFQS LQSKKVFIVT NDVVAPLYLT QVKAALADCA SVDVFVLPDG EKNKDLAHLE QIFSALLEKN YARDTTLLAL GGGVIGDMTG FAAACYQRGV PFVQVPTTLL AQVDSSVGGK TAVNHPLGKN MIGAFYQPQC VIIDTQCLHS LPKAEFDAGM AEVIKYGIIW DAEFFLWLEN NIAALKALDT QALTYAIAKC CAIKADIVSQ DETEQGVRAL LNLGHTFGHA IEAQMGYGNW LHGQAVAAGS VLAAKTALAL GLLDALSVQR IENLFRAFDL PIDGPQSMAF SDYMRHMRRD KKVLASKIRL ILPQAIGQAG IYSDVDEALL AQVINPS
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