| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0239 |
|---|
| Symbol | |
|---|
| ID | 4017986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 272495 |
|---|
| End bp | 273274 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637954222 |
|---|
| Product | thioesterase |
|---|
| Protein accession | YP_561259 |
|---|
| Protein GI | 91791608 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3208] Predicted thioesterase involved in non-ribosomal peptide biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTAAAAG CTAAAATATT TACTATACCA AAACCTAGAA TAGCGCCAAA GCTTCGTGTA
TTTTGCTTTC CTTTTGCTGG CGGCTCGTTC ACCACTTATA TTCCTTGGGT TCATTGCCTT
AATGACGACG TAGAATTAGT ATTAATTACT CTCCCAGGGC GAGCCTCTAG AGTGAGCGAA
CTCTCACATG ACCAGATGGC GTCAATCATA AGTGAATTAT TGGAGCAGAA ATCTATCTTT
GCTGATGTCC CCTATATTTT CTTTGGGCAT AGTCTAGGTA GTCGAATTGC TTTTGAATTA
GCAGTGAATC TACAATATTT AGGTATCACA TCGCCACAGT ATTTTATCGC TTCAGGTAGT
AGAGCTCCTC ACTTAGCGTC ACGCCGCGAA AGTATTCACC ACCTTCCTAA ATCAGAGTTT
ATTCAAAAAC TCGGTGAGCT CAATGGCACG CCTAAAGAGG TGTTGTCTAA TAGTGAATTG
ATTGATTTTT TTATTCCCGC TCTTCGTGCT GACTTTAAAG TCGCCCACGA TTATAGGGCA
AAAAAAATAC CGATTGAAAG CCCTATTCTG GTGTTGGGTG GGAAGGATGA TATTGATGTC
ACGCACCTTG AACTTTTAGC ATGGAGGGAA CTTTCTCAAC GTGAGACTAA GATAACACTC
ATACCGGGAG GTCATTTTTT TATTAATGAA CATAAAAGTG TAGTGATAGA GCAAGTGGAT
TTTGTGGTAA ATCTTGTTTT GACTTGTAAT GAAATGAAGC ATGTTGATGA AATTTTCTAA
|
|---|
| Protein sequence | MVKAKIFTIP KPRIAPKLRV FCFPFAGGSF TTYIPWVHCL NDDVELVLIT LPGRASRVSE
LSHDQMASII SELLEQKSIF ADVPYIFFGH SLGSRIAFEL AVNLQYLGIT SPQYFIASGS
RAPHLASRRE SIHHLPKSEF IQKLGELNGT PKEVLSNSEL IDFFIPALRA DFKVAHDYRA
KKIPIESPIL VLGGKDDIDV THLELLAWRE LSQRETKITL IPGGHFFINE HKSVVIEQVD
FVVNLVLTCN EMKHVDEIF
|
|---|
| |