Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0238 |
Symbol | |
ID | 4017985 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 271412 |
End bp | 272353 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637954221 |
Product | integrase catalytic subunit |
Protein accession | YP_561258 |
Protein GI | 91791607 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2826] Transposase and inactivated derivatives, IS30 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTATC AGCAGTTGAC TGAGGGAAGA AGATATCAGA TTTCAGTCCT TTTAGACCAG GGTATTTCGA TAACTTTGAT TGCAAAAGCT ATCAATTGTC ATCGTGCGAC TGTCTATCGA GAACTAAAAC GTTGTCATGC CCTGCAGGGT TATTGTCCTG ACAGCGCTCA AGCCAGTGCG TGTAAGATGC GGCGTCATTC AGCCAAATAT AAGATCCCCG ATACAAGAAT AAACGTCGTC CGCTTCCTAC TGCAACATGA TTGGAGCCCA GAGCAGATTT CACGGGTGTT ATCGGGCATG AACCAAGCGG TTAGTCATGA ATGGATTTAC CGCTTTGTGG CAAGGAATAA ACGTCAAGGC GGCAAGCTAT ATCGCCATCT ACGGCAAGGT CATAAGCGCT ATCGCAGAGG TAAAAAAGAG AAAGCACCAG CGATTAAAAA TGGCACCTCT ATCGACTCTA GACCTGCCAT TGTTGATACC CGTGAGCGTT TTGGTGATTG GGAAATCGAT ACCGTATTAG GCAAGCATGG GACAGGTTCA ATCGTGACAA TTTTAGAGCG AAAGACCCGT TTTTATTTAA TAAAGAAAGT GGCCTCAAAA TCTGCTGAAG ATGTGACTAA AGCGACTATC GAATTATTGA TGCCCTATAA GCAATATGTG CACACTATAA CTGCCGATAA TGGTCGTGAA TTCGCTCATC ATGAAGTCAT AGCCAACGCG CTAGACACCT CGTTTTACTT TGCTCATCCG TATAGTTCTT GGGAACGTGG CGCCAATGAA AATGCCAACG GTTTATTAAG GCAGTATGTA AAAAAAGGGA CTGACTTAAG GACAGTAAGC GACGACATCA TCTTATTTGC CCAGAACAGG ATTAATTACA GACCTAAGAA ATGTTTGAAG TTTAAGCAGC CAGCTGTTGT GTTTAAACAA TTAGCCGCTT AA
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Protein sequence | MSYQQLTEGR RYQISVLLDQ GISITLIAKA INCHRATVYR ELKRCHALQG YCPDSAQASA CKMRRHSAKY KIPDTRINVV RFLLQHDWSP EQISRVLSGM NQAVSHEWIY RFVARNKRQG GKLYRHLRQG HKRYRRGKKE KAPAIKNGTS IDSRPAIVDT RERFGDWEID TVLGKHGTGS IVTILERKTR FYLIKKVASK SAEDVTKATI ELLMPYKQYV HTITADNGRE FAHHEVIANA LDTSFYFAHP YSSWERGANE NANGLLRQYV KKGTDLRTVS DDIILFAQNR INYRPKKCLK FKQPAVVFKQ LAA
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