Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0221 |
Symbol | |
ID | 4017941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 240144 |
End bp | 242276 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637954197 |
Product | GGDEF domain-containing protein |
Protein accession | YP_561241 |
Protein GI | 91791590 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGTGGAGC CAACCAGTTC ATTGGTTTTT GTAAACAATA ATATCGAATT AGATCTTACT TGGTCTCAAC TTAGGGCTGT GCATCCTGTC CATATTCAAT ATTTGAAAAA TTTAGCTGTT GAAGCCTCTT TCAGTGTCTC CCTTGTGTGT AATGGCCAGC TATGGGGATT ACTAGCCTGC CATAATATGA CTGCTAAATA CCTTTCATTT GAAACCAGAC AACTATGTGA GGAATTATCA CAAATTACCA GTTTGCACAT GTCTGGATTA CTCAGAGCCG AAATTGATTT TCAGCGCTAT CACTACAAGG TGGAGTTTGC CGAGATACGA GGTGCAATGC AGAGCAGTAT AGATGCGTTT AAAGCGATCA AGAGTCAAAT ATCTGAAATT AAAACGTTAC TCAATGCTGA TGGAATTTGG CACCACATAG ATGGGGAAGA TTATTATCAT GGTCAAGTTC CAGATGAGTT GAGTTTGAGT TTATTAGGCA ATTGGTTGGC GCAATTTGAT CGCCACCAAG TGATGTCGAG GCACACAGTT GTTGAGGATT TTAAGCAGAA CAAAGCCTTA GTCAAATTTG CCAGTGGATT ACTGTTTTTA CCGCTAAATC AGCAAAACTT TATCGTACTA TTTCGCCGTG AAGAAATAGA GACTGTAAAT TGGGCTGGTA AACCACAAAG TCACAATGAA CAGGACATGT CTACCAGTGC GTTGACACCG AGAAACTCTT TCTTGACCTG GGCCGAGGTC ATGGGAGGGC AAGCTAAGCC GTGGAACTTG ATTGATATTG AAATGGCTGA AGACATTCGT TGTGAACTCG TCCGGCTGAT TGAAAAAAAT CAATTAGAAA TAATAGCCTT AAAAGATCCA CTTACTGGAA TCGCAAATCG ATTAATGTTT GAAAGAAAGC TCAAATCAGC ATTACAGCAA GCCTTGGAGG CTAACCAGCA GTTTGCGATT TATATGATTG ACCTAGATAG GTTTAAACCA GTCAATGACA CTTATGGTCA TGCTGTTGGT GATGAGTTAC TCATTCAGGT CACCCAAAGG TTGCAGGCCT TGCTTAGGTG TGAGGATATG GTTGCAAGAT TGGGTGGCGA TGAGTTTGCT GTCATCCAGC TGGGGATCAG TAATAAAGGT GATATAGAGA GAATAGCCAA GTTGATGGTC GAAGAGGTCA AGCGACCCTT TTTGATTGAA GGAAAAAATA TTGAAATTGG TGCCAGTATC GGTATCACAA TTTGCCCGCT CGATGCCATA AGCCAAACTG AACTGCTCTT AGGGGCTGAC TTAGCCTTGT ATGAAGTGAA AAAAAGTGGT CGCAATGGCT TTAAACACTT TGAGCCTAGT ATGTTGTTAG AGAAAACTAA CGATGAAAGC ATTAGGAATC AATTATTGCG GGCTTTTGAA AATAAAGAAC TTGAGATGGT TTACCAGCCA ATTATCGACA GTCGTTCAAA GAAAATTGTT GGTTTAGAGG CTTTTACGCG TTGGCAACAC CCAGTTCTTG GGTTTATTGC TGCACAAGAA TTTGTCAGTG CGATAGATAA AAATCACCTT AATCCTGAAT TTGTCGATTG GATGCTAATG ACGACATTTA GTGACTATCA ACAATGGCAA AGGCAGGGGA TTGCGTCTAT TCCTGTGAGT ATTAATTTAC GTTCGGATCA ATTTCTGTCA TTAGATATTG AAAATAAATG TCGCGCTTTA AGTCAGCAAT ATCAAGTCGC GACAACTTGG CTGAGAATAG ACTTAGATGA ACCTACACTG GCAATCGATG CTAACCGCAG TGAAATTAAA ATTAATGCCT TAGCCCAGCA TGGGATTCTA TGTAATATCG ACCACTTCGG GCAGGGGCTA TTATCACTTA AACAACTCAC TAAGTTGAAA GTGAACAGTC TAAAAATTGA TAGCCGTTTA CTAATGGATG ATAAGAAAAA CATTAAAACT CAAGCTCTGG CGACTATTTT AAAAGCCATC GGTGAGGTGA TGAATGTACC AGTTGTGGCC ACTAGAGTTG AAAAGCAAGA AGTCATGGCC AAGGCCAAAT CAATGGGGAT AAATCTAGTG CAAGGGTTTG CCATTATAGA GCCCATGTCT GTGGCTGATG TGTCAGCCTA TATGACGAAG TAG
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Protein sequence | MVEPTSSLVF VNNNIELDLT WSQLRAVHPV HIQYLKNLAV EASFSVSLVC NGQLWGLLAC HNMTAKYLSF ETRQLCEELS QITSLHMSGL LRAEIDFQRY HYKVEFAEIR GAMQSSIDAF KAIKSQISEI KTLLNADGIW HHIDGEDYYH GQVPDELSLS LLGNWLAQFD RHQVMSRHTV VEDFKQNKAL VKFASGLLFL PLNQQNFIVL FRREEIETVN WAGKPQSHNE QDMSTSALTP RNSFLTWAEV MGGQAKPWNL IDIEMAEDIR CELVRLIEKN QLEIIALKDP LTGIANRLMF ERKLKSALQQ ALEANQQFAI YMIDLDRFKP VNDTYGHAVG DELLIQVTQR LQALLRCEDM VARLGGDEFA VIQLGISNKG DIERIAKLMV EEVKRPFLIE GKNIEIGASI GITICPLDAI SQTELLLGAD LALYEVKKSG RNGFKHFEPS MLLEKTNDES IRNQLLRAFE NKELEMVYQP IIDSRSKKIV GLEAFTRWQH PVLGFIAAQE FVSAIDKNHL NPEFVDWMLM TTFSDYQQWQ RQGIASIPVS INLRSDQFLS LDIENKCRAL SQQYQVATTW LRIDLDEPTL AIDANRSEIK INALAQHGIL CNIDHFGQGL LSLKQLTKLK VNSLKIDSRL LMDDKKNIKT QALATILKAI GEVMNVPVVA TRVEKQEVMA KAKSMGINLV QGFAIIEPMS VADVSAYMTK
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