| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0195 |
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| Symbol | |
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| ID | 4017915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 208504 |
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| End bp | 209493 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637954171 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_561215 |
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| Protein GI | 91791564 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000136163 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGACTCG TCGACATTGA GCAGGTTAAC
CCAACACGCG CCAAAGTTAC ACTAGAGCCA CTCGAACGTG GTTTTGGCCA TACCTTAGGT
AACGCGTTGC GTCGCATCCT ATTGTCGTCT ATGCCAGGCT GCGCAGTTAC AGAAGTCGAA
ATCGACGGTG TGCTGCACGA ATACAGCAGC AAGGAAGGCG TGCAAGAAGA TATCCTTGAG
ATATTGCTCA ATCTTAAAGG TTTAGCAGTA ACAATCGAGG GTAAAGACGA GGCTATGCTT
ACGTTAAGCA AGTCCGGCAC AGGCCCTGTT ACTGCCGCAG ACATCACACA TGATGGCGAT
GTTACCATCA TGAATCCTGA TCATGTTATC TGTCATTTAA CAGGTAACAA TGATATCAGC
ATGCGTATCC GCGTTGAGCG TGGTCGCGGT TATGTGCCAG CATCTGCTCG TGCACAGACC
GAAGACGATG ATCGCCCAAT CGGCCGCTTG TTGGTTGATG CTTCTTTCTC ACCCGTTGCT
CGCATTGCAT ACAATGTTGA AGCGGCTCGT GTTGAACAGC GCACTGACTT AGACAAACTC
GTTATCGATA TGACCACAAA CGGTACTATC GATCCTGAGG AAGCAATACG TCGTTCTGCA
ACAATTTTAG CTGAACAGCT AGATGCGTTT GTTGAATTAC GTGATGTGAC TGAGCCAGAG
CAGAAAGAAG AGAAACCGGA GTTTGATCCG ATTCTGCTGC GTCCTGTCGA CGATTTAGAG
CTAACTGTAC GTTCAGCCAA CTGCTTGAAG GCTGAAGCGA TTCATTACAT CGGAGATCTT
GTACAACGAA CTGAAGTGGA ATTGCTTAAA ACTCCTAACC TAGGTAAGAA GTCTCTTACT
GAAATCAAGG ATGTTCTAGC GTCTCGCGGA CTTTCATTAG GTATGCGTCT TGAAAACTGG
CCTCCAGCTA GTTTAGTAGA CGACCTATAA
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| Protein sequence | MQGSVTEFLK PRLVDIEQVN PTRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV TIEGKDEAML TLSKSGTGPV TAADITHDGD
VTIMNPDHVI CHLTGNNDIS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDASFSPVA
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE
QKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPASLVDDL
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