Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0122 |
Symbol | |
ID | 4017206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 133422 |
End bp | 134966 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637954095 |
Product | type II secretion system protein E |
Protein accession | YP_561142 |
Protein GI | 91791491 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.766789 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTGATC AATTGGCACA AGTGTCCAAC GACTTAACCT TAGAGCTTGA AGATGCCGAT GAGGTGTTTC ACTCCAATAG CAAGGAGCGC TTGCCGTTTG CATTTTCTCA GCGTTTTCAA TTGGTACTGG CTAAGGAACT GGGGGTGTTA AGTCTGTTTT ATACTGACAA TACTCCGCTC AATGCCATGC TAGAAGTACG CCGCTATACC GCCGCCGAGC TGCCTTTGAT TAAGCTTGAG GTGAATAAGT TTGAGTCTAA ACTCACTCAA GCTTATCAGG CGAATTCCTC CGAAGCACAG CAGCTGATGG AAGACATAGG CAACGAGATG GATTTATTCA CCCTTGCCGA AGAAATGCCT CAGACCGAAG ATTTATTAGA AGGGGACGAT GATGCGCCTA TCATCAAGCT GATTAATGCC TTGTTATCTG AAGCCATCAA AGAAGAAGCC TCAGATATCC ATATCGAGAC CTATGAAAAG CAATTAATCG TGCGTTTTCG CATTGATGGT GTGCTCAAAG AAGTGCTCAA GCCTAATCGC AAACTGTCCT CCTTACTGGT ATCGCGCATT AAGGTCATGG CCCGCCTGGA TATCGCCGAA AAACGTGTGC CCCAAGATGG ACGTATCTCG CTGCGCATCG CGGGTCGTGC AGTGGATGTG CGGGTATCGA CCATGCCATC GAGTCATGGC GAGCGGGTGG TGCTGCGTTT ACTGGATAAA AACACCGGTA ATTTAGATCT TAAACAGTTA GGCATGACGC AAGGCATACG TGAGAAATTT GATGCGCTTA TCCGCAGACC TCACGGCATT ATCTTGGTCA CAGGCCCCAC AGGCTCGGGT AAGAGTACTA CCTTGTATGC CGGCCTTACC GAAATTAACT CTAAAGATAC CAACATATTA ACCGTTGAAG ACCCCATCGA GTATGAACTT CATGGGGTCG GCCAGACGCA AGTAAATATC AAGGCTGATA TGACCTTCGC CCGTGGTCTG CGTGCGATTC TACGTCAAGA TCCCGATGTG GTCATGATAG GTGAAATTCG TGACTTAGAA ACCGCCCAAA TTGCGGTGCA AGCCTCATTA ACCGGTCACT TAGTGATATC AACCCTGCAT ACCAATACTG CCTCTGGTGC CATTACCCGT CTGCAAGACA TGGGGGTCGA GCCTTTCTTG GTGTCTTCGA GTCTCTTAGG GGTGTTAGCC CAGCGCTTGA TCAGAACCTT GTGCCCAAGT TGTAAGGTAG AGCATGAGCC CGATATGCGA GAGCGTGAGC TGTTAGGGAT TAGTGACAGT GACCCAAGGC ATATATACCG TGCCAATGGC TGTAAGGCTT GTGGTAATAA CGGTTACCGT GGCCGTACGG GTATTCATGA ATTACTGACA GTGGATGACA GCGTGCGTGA ACTTATCCAT GGGGGTAAGG GCGAGCTTGC TATCGAGCGT TATATTCGTC AAAGCGTGCC TAGCATACGT CACGATGGCA TGAGCAAGGT GCTCGCCGGG GTGACCACAC TTGAAGAAGT GCTACGTGTG ACCCGCGAGG AGTAA
|
Protein sequence | MTDQLAQVSN DLTLELEDAD EVFHSNSKER LPFAFSQRFQ LVLAKELGVL SLFYTDNTPL NAMLEVRRYT AAELPLIKLE VNKFESKLTQ AYQANSSEAQ QLMEDIGNEM DLFTLAEEMP QTEDLLEGDD DAPIIKLINA LLSEAIKEEA SDIHIETYEK QLIVRFRIDG VLKEVLKPNR KLSSLLVSRI KVMARLDIAE KRVPQDGRIS LRIAGRAVDV RVSTMPSSHG ERVVLRLLDK NTGNLDLKQL GMTQGIREKF DALIRRPHGI ILVTGPTGSG KSTTLYAGLT EINSKDTNIL TVEDPIEYEL HGVGQTQVNI KADMTFARGL RAILRQDPDV VMIGEIRDLE TAQIAVQASL TGHLVISTLH TNTASGAITR LQDMGVEPFL VSSSLLGVLA QRLIRTLCPS CKVEHEPDMR ERELLGISDS DPRHIYRANG CKACGNNGYR GRTGIHELLT VDDSVRELIH GGKGELAIER YIRQSVPSIR HDGMSKVLAG VTTLEEVLRV TREE
|
| |